10977609 report - OSSR Reports

Repository Information

Repository Name: AMIGA-IAA/hcg-16: Updated Binder configuration
Record ID: 10977609
Repository URL: git+https://github.com/AMIGA-IAA/hcg-16.git
Tool Type: SoftwareSourceCode
Version: 1.2.1

Results

Indicator	generated by	evidence	Value	Run Status	Check passed
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'developmentStatus', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.	0.3783783783783784	✅	✅
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'developmentStatus', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.	0.3783783783783784	✅	❌
https://w3id.org/everse/i/indicators/doi_presence	SOMEF	DOI not found in SOMEF output. Confidence: 0.0%		❌	❌
https://w3id.org/everse/i/indicators/codemeta_discrepancy	SOMEF, Codemeta Completeness Tool	Comparison value: 0.6176470588235294, Threshold: 0.5, Status: True	0.6176470588235294	❌	✅

Results Output

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.38
Evidence: Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'developmentStatus', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.
Output:

{"pass": true, "value": 0.3783783783783784, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/MIT", "codeRepository": "git+https://github.com/AMIGA-IAA/hcg-16.git", "dateCreated": "2019-10-09", "datePublished": "2019-10-09", "dateModified": "2021-09-28", "downloadUrl": "https://github.com/AMIGA-IAA/hcg-16/releases/tag/v1.2.1", "issueTracker": "https://github.com/AMIGA-IAA/hcg-16/issues", "name": "Pipeline for HCG-16 Project", "version": "1.2.1", "identifier": "https://zenodo.org/doi/10.5281/zenodo.5534681", "description": "This repository hosts a pipeline to reproduce the data reduction and analysis of Jones et al. 2019.", "applicationCategory": "Astronomy", "developmentStatus": "inactive", "referencePublication": "https://doi.org/10.1051/0004-6361/201936349", "readme": "https://github.com/AMIGA-IAA/hcg-16/blob/master/README.md", "softwareVersion": "1.2.1", "funder": {"@type": "Organization", "name": "MINECO, FEDER"}, "keywords": ["Astronomy", "Galaxies", "Galaxy Groups", "Radio Interferometry", "VLA", "HCG16", "HI line emission"], "programmingLanguage": ["Python"], "runtimePlatform": ["Python", "Docker"], "operatingSystem": ["Linux"], "softwareRequirements": ["https://github.com/AMIGA-IAA/hcg-16/blob/master/conda-linux-64.lock"], "relatedLink": ["https://ui.adsabs.harvard.edu/abs/2019A%26A...632A..78J/abstract"], "author": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-3143-4798", "givenName": "Sebastian", "familyName": "Luna-Valero", "email": "sebastian.luna.valero@gmail.com", "affiliation": {"@type": "Organization", "name": "EGI Foundation"}}, {"@type": "Person", "givenName": "Julian", "familyName": "Garrido"}, {"@type": "Person", "givenName": "Susana", "familyName": "Sanchez"}], "contributor": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-3143-4798", "givenName": "Sebastian", "familyName": "Luna-Valero", "email": "sebastian.luna.valero@gmail.com", "affiliation": {"@type": "Organization", "name": "EGI Foundation"}}, {"@type": "Person", "givenName": "Julian", "familyName": "Garrido"}], "maintainer": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}]}, "threshold": 0.2}

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.38
Evidence: Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'developmentStatus', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.
Output:

{"pass": false, "value": 0.3783783783783784, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/MIT", "codeRepository": "git+https://github.com/AMIGA-IAA/hcg-16.git", "dateCreated": "2019-10-09", "datePublished": "2019-10-09", "dateModified": "2021-09-28", "downloadUrl": "https://github.com/AMIGA-IAA/hcg-16/releases/tag/v1.2.1", "issueTracker": "https://github.com/AMIGA-IAA/hcg-16/issues", "name": "Pipeline for HCG-16 Project", "version": "1.2.1", "identifier": "https://zenodo.org/doi/10.5281/zenodo.5534681", "description": "This repository hosts a pipeline to reproduce the data reduction and analysis of Jones et al. 2019.", "applicationCategory": "Astronomy", "developmentStatus": "inactive", "referencePublication": "https://doi.org/10.1051/0004-6361/201936349", "readme": "https://github.com/AMIGA-IAA/hcg-16/blob/master/README.md", "softwareVersion": "1.2.1", "funder": {"@type": "Organization", "name": "MINECO, FEDER"}, "keywords": ["Astronomy", "Galaxies", "Galaxy Groups", "Radio Interferometry", "VLA", "HCG16", "HI line emission"], "programmingLanguage": ["Python"], "runtimePlatform": ["Python", "Docker"], "operatingSystem": ["Linux"], "softwareRequirements": ["https://github.com/AMIGA-IAA/hcg-16/blob/master/conda-linux-64.lock"], "relatedLink": ["https://ui.adsabs.harvard.edu/abs/2019A%26A...632A..78J/abstract"], "author": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-3143-4798", "givenName": "Sebastian", "familyName": "Luna-Valero", "email": "sebastian.luna.valero@gmail.com", "affiliation": {"@type": "Organization", "name": "EGI Foundation"}}, {"@type": "Person", "givenName": "Julian", "familyName": "Garrido"}, {"@type": "Person", "givenName": "Susana", "familyName": "Sanchez"}], "contributor": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-3143-4798", "givenName": "Sebastian", "familyName": "Luna-Valero", "email": "sebastian.luna.valero@gmail.com", "affiliation": {"@type": "Organization", "name": "EGI Foundation"}}, {"@type": "Person", "givenName": "Julian", "familyName": "Garrido"}], "maintainer": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}]}, "threshold": 0.5}

https://w3id.org/everse/i/indicators/codemeta_discrepancy

Status: FailedActionStatus
Value: 0.62
Evidence: Comparison value: 0.6176470588235294, Threshold: 0.5, Status: True
Output:

{"pass": true, "value": 0.6176470588235294, "threshold": 0.5, "results": {"completeness_1": 0.3783783783783784, "codemeta_version_1": "codemeta-2.0", "codemeta_version_2": "codemeta-3.0", "completeness_2": 0.0, "missing_keys_1": ["targetProduct", "applicationSubCategory", "fileSize", "installUrl", "memoryRequirements", "permissions", "processorRequirements", "releaseNotes", "softwareHelp", "storageRequirements", "supportingData", "citation", "copyrightHolder", "copyrightYear", "editor", "encoding", "fileFormat", "producer", "provider", "publisher", "sponsor", "isAccessibleForFree", "isPartOf", "hasPart", "position", "sameAs", "url", "givenName", "familyName", "email", "affiliation", "address", "", "", "softwareSuggestions", "contIntegration", "buildInstructions", "embargoDate", "funding", "creator", "", "", "", "endDate", "roleName", "startDate"], "missing_keys_2": ["codeRepository", "programmingLanguage", "runtimePlatform", "targetProduct", "applicationCategory", "applicationSubCategory", "downloadUrl", "fileSize", "installUrl", "memoryRequirements", "operatingSystem", "permissions", "processorRequirements", "releaseNotes", "softwareHelp", "softwareRequirements", "softwareVersion", "storageRequirements", "supportingData", "author", "citation", "contributor", "copyrightHolder", "copyrightYear", "dateCreated", "dateModified", "datePublished", "editor", "encoding", "fileFormat", "funder", "keywords", "license", "producer", "provider", "publisher", "sponsor", "version", "isAccessibleForFree", "isPartOf", "hasPart", "position", "description", "identifier", "name", "sameAs", "url", "relatedLink", "givenName", "familyName", "email", "affiliation", "identifier", "name", "address", "", "", "softwareSuggestions", "maintainer", "continuousIntegration", "buildInstructions", "developmentStatus", "embargoEndDate", "funding", "issueTracker", "referencePublication", "readme", "creator", "review", "reviewAspect", "reviewBody", "endDate", "roleName", "startDate"], "existing_keys_1": ["codeRepository", "programmingLanguage", "runtimePlatform", "applicationCategory", "downloadUrl", "operatingSystem", "softwareRequirements", "softwareVersion", "author", "contributor", "dateCreated", "dateModified", "datePublished", "funder", "keywords", "license", "version", "description", "identifier", "name", "relatedLink", "identifier", "name", "maintainer", "developmentStatus", "issueTracker", "referencePublication", "readme"], "existing_keys_2": [], "differences": {"codeRepository": {"value_in_1": "git+https://github.com/AMIGA-IAA/hcg-16.git", "value_in_2": null}, "programmingLanguage": {"value_in_1": ["Python"], "value_in_2": null}, "runtimePlatform": {"value_in_1": ["Python", "Docker"], "value_in_2": null}, "applicationCategory": {"value_in_1": "Astronomy", "value_in_2": null}, "downloadUrl": {"value_in_1": "https://github.com/AMIGA-IAA/hcg-16/releases/tag/v1.2.1", "value_in_2": null}, "operatingSystem": {"value_in_1": ["Linux"], "value_in_2": null}, "softwareRequirements": {"value_in_1": ["https://github.com/AMIGA-IAA/hcg-16/blob/master/conda-linux-64.lock"], "value_in_2": null}, "softwareVersion": {"value_in_1": "1.2.1", "value_in_2": null}, "author": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-3143-4798", "givenName": "Sebastian", "familyName": "Luna-Valero", "email": "sebastian.luna.valero@gmail.com", "affiliation": {"@type": "Organization", "name": "EGI Foundation"}}, {"@type": "Person", "givenName": "Julian", "familyName": "Garrido"}, {"@type": "Person", "givenName": "Susana", "familyName": "Sanchez"}], "value_in_2": null}, "contributor": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-3143-4798", "givenName": "Sebastian", "familyName": "Luna-Valero", "email": "sebastian.luna.valero@gmail.com", "affiliation": {"@type": "Organization", "name": "EGI Foundation"}}, {"@type": "Person", "givenName": "Julian", "familyName": "Garrido"}], "value_in_2": null}, "dateCreated": {"value_in_1": "2019-10-09", "value_in_2": null}, "dateModified": {"value_in_1": "2021-09-28", "value_in_2": null}, "datePublished": {"value_in_1": "2019-10-09", "value_in_2": null}, "funder": {"value_in_1": {"@type": "Organization", "name": "MINECO, FEDER"}, "value_in_2": null}, "keywords": {"value_in_1": ["Astronomy", "Galaxies", "Galaxy Groups", "Radio Interferometry", "VLA", "HCG16", "HI line emission"], "value_in_2": null}, "license": {"value_in_1": "https://spdx.org/licenses/MIT", "value_in_2": null}, "version": {"value_in_1": "1.2.1", "value_in_2": null}, "description": {"value_in_1": "This repository hosts a pipeline to reproduce the data reduction and analysis of Jones et al. 2019.", "value_in_2": null}, "identifier": {"value_in_1": "https://zenodo.org/doi/10.5281/zenodo.5534681", "value_in_2": null}, "name": {"value_in_1": "Pipeline for HCG-16 Project", "value_in_2": null}, "relatedLink": {"value_in_1": ["https://ui.adsabs.harvard.edu/abs/2019A%26A...632A..78J/abstract"], "value_in_2": null}, "maintainer": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-5434-4904", "givenName": "Michael", "familyName": "Jones", "email": "jonesmg@arizona.edu", "affiliation": {"@type": "Organization", "name": "University of Arizona"}}], "value_in_2": null}, "developmentStatus": {"value_in_1": "inactive", "value_in_2": null}, "issueTracker": {"value_in_1": "https://github.com/AMIGA-IAA/hcg-16/issues", "value_in_2": null}, "referencePublication": {"value_in_1": "https://doi.org/10.1051/0004-6361/201936349", "value_in_2": null}, "readme": {"value_in_1": "https://github.com/AMIGA-IAA/hcg-16/blob/master/README.md", "value_in_2": null}}, "equivalences": {"targetProduct": null, "applicationSubCategory": null, "fileSize": null, "installUrl": null, "memoryRequirements": null, "permissions": null, "processorRequirements": null, "releaseNotes": null, "softwareHelp": null, "storageRequirements": null, "supportingData": null, "citation": null, "copyrightHolder": null, "copyrightYear": null, "editor": null, "encoding": null, "fileFormat": null, "producer": null, "provider": null, "publisher": null, "sponsor": null, "isAccessibleForFree": null, "isPartOf": null, "hasPart": null, "position": null, "sameAs": null, "url": null, "givenName": null, "familyName": null, "email": null, "affiliation": null, "address": null, "": null, "softwareSuggestions": null, "contIntegration": null, "buildInstructions": null, "embargoDate": null, "funding": null, "creator": null, "endDate": null, "roleName": null, "startDate": null}}}

Logs

Log File: docs/records/10977609/10977609_somef_log.txt

Running SOMEF on repository: https://github.com/AMIGA-IAA/hcg-16
SOftware Metadata Extraction Framework (SOMEF) Command Line Interface

Error: Please provide a config.json file or run somef configure.

[Somef Tool] Error occurred while processing record ID 10977609: somef file docs/records/10977609/10977609_somef.json does not exist

Log File: docs/records/10977609/10977609_codemeta_completeness_tool_log.txt

[codemeta completeness tool] Running Codemeta Completeness Tool on record ID: 10977609

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