Comparison Report

Comparison between `codemeta_10977609.json` and `somef_codemeta_10977609.json`:

Summary

Comparison for Zenodo record 10977609, Pipeline for HCG-16 Project, hosted on RepoType.GITHUB:

contains 0 differences
contains 0 same values
missing 0 keys in docs/records/10977609/codemeta_10977609.json:
missing 10 keys in docs/records/10977609/somef_codemeta_10977609.json:
- name
- codeRepository
- license
- version
- softwareVersion
- datePublished
- programmingLanguage
- issueTracker
- readme
- dateCreated

Full Report

Same Values

No items have the same values.

Differences

No differences found.

Missing Keys in First File:

Missing Keys in Second File:

name
codeRepository
license
version
softwareVersion
datePublished
programmingLanguage
issueTracker
readme
dateCreated

Completeness Report

10977609

Data

indicator: {'id': 'F1', 'name': 'CodemetaCompleteness', 'identifier': ''}
artifacts: {'url': '', 'softwareVersion': '1.2.1', 'report': 'Completeness of the CodeMeta file based on the CodeMeta codemeta-3.0 specification.\n\nThe following keys are missing: targetProduct, applicationSubCategory, fileSize, installUrl, memoryRequirements, permissions, processorRequirements, releaseNotes, softwareHelp, storageRequirements, supportingData, citation, copyrightHolder, copyrightYear, editor, encoding, fileFormat, producer, provider, publisher, sponsor, isAccessibleForFree, isPartOf, hasPart, position, sameAs, url, givenName, familyName, email, affiliation, address, , , softwareSuggestions, continuousIntegration, buildInstructions, embargoEndDate, funding, creator, review, reviewAspect, reviewBody, endDate, roleName, startDate', 'codemeta': {'@context': 'https://doi.org/10.5063/schema/codemeta-2.0', '@type': 'SoftwareSourceCode', 'license': 'https://spdx.org/licenses/MIT', 'codeRepository': 'git+https://github.com/AMIGA-IAA/hcg-16.git', 'dateCreated': '2019-10-09', 'datePublished': '2019-10-09', 'dateModified': '2021-09-28', 'downloadUrl': 'https://github.com/AMIGA-IAA/hcg-16/releases/tag/v1.2.1', 'issueTracker': 'https://github.com/AMIGA-IAA/hcg-16/issues', 'name': 'Pipeline for HCG-16 Project', 'version': '1.2.1', 'identifier': 'https://zenodo.org/doi/10.5281/zenodo.5534681', 'description': 'This repository hosts a pipeline to reproduce the data reduction and analysis of Jones et al. 2019.', 'applicationCategory': 'Astronomy', 'developmentStatus': 'inactive', 'referencePublication': 'https://doi.org/10.1051/0004-6361/201936349', 'readme': 'https://github.com/AMIGA-IAA/hcg-16/blob/master/README.md', 'softwareVersion': '1.2.1', 'funder': {'@type': 'Organization', 'name': 'MINECO, FEDER'}, 'keywords': ['Astronomy', 'Galaxies', 'Galaxy Groups', 'Radio Interferometry', 'VLA', 'HCG16', 'HI line emission'], 'programmingLanguage': ['Python'], 'runtimePlatform': ['Python', 'Docker'], 'operatingSystem': ['Linux'], 'softwareRequirements': ['https://github.com/AMIGA-IAA/hcg-16/blob/master/conda-linux-64.lock'], 'relatedLink': ['https://ui.adsabs.harvard.edu/abs/2019A%26A...632A..78J/abstract'], 'author': [{'@type': 'Person', '@id': 'https://orcid.org/0000-0002-5434-4904', 'givenName': 'Michael', 'familyName': 'Jones', 'email': 'jonesmg@arizona.edu', 'affiliation': {'@type': 'Organization', 'name': 'University of Arizona'}}, {'@type': 'Person', '@id': 'https://orcid.org/0000-0002-3143-4798', 'givenName': 'Sebastian', 'familyName': 'Luna-Valero', 'email': 'sebastian.luna.valero@gmail.com', 'affiliation': {'@type': 'Organization', 'name': 'EGI Foundation'}}, {'@type': 'Person', 'givenName': 'Julian', 'familyName': 'Garrido'}, {'@type': 'Person', 'givenName': 'Susana', 'familyName': 'Sanchez'}], 'contributor': [{'@type': 'Person', '@id': 'https://orcid.org/0000-0002-5434-4904', 'givenName': 'Michael', 'familyName': 'Jones', 'email': 'jonesmg@arizona.edu', 'affiliation': {'@type': 'Organization', 'name': 'University of Arizona'}}, {'@type': 'Person', '@id': 'https://orcid.org/0000-0002-3143-4798', 'givenName': 'Sebastian', 'familyName': 'Luna-Valero', 'email': 'sebastian.luna.valero@gmail.com', 'affiliation': {'@type': 'Organization', 'name': 'EGI Foundation'}}, {'@type': 'Person', 'givenName': 'Julian', 'familyName': 'Garrido'}], 'maintainer': [{'@type': 'Person', '@id': 'https://orcid.org/0000-0002-5434-4904', 'givenName': 'Michael', 'familyName': 'Jones', 'email': 'jonesmg@arizona.edu', 'affiliation': {'@type': 'Organization', 'name': 'University of Arizona'}}]}}
result: {'type': 'float', 'value': 37.83783783783784}

5534682

Data

indicator: {'id': 'F1', 'name': 'CodemetaCompleteness', 'identifier': ''}
artifacts: {'url': '', 'softwareVersion': '', 'report': 'Completeness of the CodeMeta file based on the CodeMeta codemeta-3.0 specification.\n\nThe following keys are missing: codeRepository, programmingLanguage, runtimePlatform, targetProduct, applicationCategory, applicationSubCategory, downloadUrl, fileSize, installUrl, memoryRequirements, operatingSystem, permissions, processorRequirements, releaseNotes, softwareHelp, softwareRequirements, softwareVersion, storageRequirements, supportingData, author, citation, contributor, copyrightHolder, copyrightYear, dateCreated, dateModified, datePublished, editor, encoding, fileFormat, funder, keywords, license, producer, provider, publisher, sponsor, version, isAccessibleForFree, isPartOf, hasPart, position, description, identifier, name, sameAs, url, relatedLink, givenName, familyName, email, affiliation, identifier, name, address, , , softwareSuggestions, maintainer, continuousIntegration, buildInstructions, developmentStatus, embargoEndDate, funding, issueTracker, referencePublication, readme, creator, review, reviewAspect, reviewBody, endDate, roleName, startDate', 'codemeta': {}}
result: {'type': 'float', 'value': 0.0}

10800706

Data

indicator: {'id': 'F1', 'name': 'CodemetaCompleteness', 'identifier': ''}
artifacts: {'url': '', 'softwareVersion': '1.2.1', 'report': 'Completeness of the CodeMeta file based on the CodeMeta codemeta-3.0 specification.\n\nThe following keys are missing: targetProduct, applicationSubCategory, fileSize, installUrl, memoryRequirements, permissions, processorRequirements, releaseNotes, softwareHelp, storageRequirements, supportingData, citation, copyrightHolder, copyrightYear, editor, encoding, fileFormat, producer, provider, publisher, sponsor, isAccessibleForFree, isPartOf, hasPart, position, sameAs, url, givenName, familyName, email, affiliation, address, , , softwareSuggestions, continuousIntegration, buildInstructions, embargoEndDate, funding, creator, review, reviewAspect, reviewBody, endDate, roleName, startDate', 'codemeta': {'@context': 'https://doi.org/10.5063/schema/codemeta-2.0', '@type': 'SoftwareSourceCode', 'license': 'https://spdx.org/licenses/MIT', 'codeRepository': 'git+https://github.com/AMIGA-IAA/hcg-16.git', 'dateCreated': '2019-10-09', 'datePublished': '2019-10-09', 'dateModified': '2021-09-28', 'downloadUrl': 'https://github.com/AMIGA-IAA/hcg-16/releases/tag/v1.2.1', 'issueTracker': 'https://github.com/AMIGA-IAA/hcg-16/issues', 'name': 'Pipeline for HCG-16 Project', 'version': '1.2.1', 'identifier': 'https://zenodo.org/doi/10.5281/zenodo.5534681', 'description': 'This repository hosts a pipeline to reproduce the data reduction and analysis of Jones et al. 2019.', 'applicationCategory': 'Astronomy', 'developmentStatus': 'inactive', 'referencePublication': 'https://doi.org/10.1051/0004-6361/201936349', 'readme': 'https://github.com/AMIGA-IAA/hcg-16/blob/master/README.md', 'softwareVersion': '1.2.1', 'funder': {'@type': 'Organization', 'name': 'MINECO, FEDER'}, 'keywords': ['Astronomy', 'Galaxies', 'Galaxy Groups', 'Radio Interferometry', 'VLA', 'HCG16', 'HI line emission'], 'programmingLanguage': ['Python'], 'runtimePlatform': ['Python', 'Docker'], 'operatingSystem': ['Linux'], 'softwareRequirements': ['https://github.com/AMIGA-IAA/hcg-16/blob/master/conda-linux-64.lock'], 'relatedLink': ['https://ui.adsabs.harvard.edu/abs/2019A%26A...632A..78J/abstract'], 'author': [{'@type': 'Person', '@id': 'https://orcid.org/0000-0002-5434-4904', 'givenName': 'Michael', 'familyName': 'Jones', 'email': 'jonesmg@arizona.edu', 'affiliation': {'@type': 'Organization', 'name': 'University of Arizona'}}, {'@type': 'Person', '@id': 'https://orcid.org/0000-0002-3143-4798', 'givenName': 'Sebastian', 'familyName': 'Luna-Valero', 'email': 'sebastian.luna.valero@gmail.com', 'affiliation': {'@type': 'Organization', 'name': 'EGI Foundation'}}, {'@type': 'Person', 'givenName': 'Julian', 'familyName': 'Garrido'}, {'@type': 'Person', 'givenName': 'Susana', 'familyName': 'Sanchez'}], 'contributor': [{'@type': 'Person', '@id': 'https://orcid.org/0000-0002-5434-4904', 'givenName': 'Michael', 'familyName': 'Jones', 'email': 'jonesmg@arizona.edu', 'affiliation': {'@type': 'Organization', 'name': 'University of Arizona'}}, {'@type': 'Person', '@id': 'https://orcid.org/0000-0002-3143-4798', 'givenName': 'Sebastian', 'familyName': 'Luna-Valero', 'email': 'sebastian.luna.valero@gmail.com', 'affiliation': {'@type': 'Organization', 'name': 'EGI Foundation'}}, {'@type': 'Person', 'givenName': 'Julian', 'familyName': 'Garrido'}], 'maintainer': [{'@type': 'Person', '@id': 'https://orcid.org/0000-0002-5434-4904', 'givenName': 'Michael', 'familyName': 'Jones', 'email': 'jonesmg@arizona.edu', 'affiliation': {'@type': 'Organization', 'name': 'University of Arizona'}}]}}
result: {'type': 'float', 'value': 37.83783783783784}

Logs

Processing record: Record #10977609 : AMIGA-IAA/hcg-16: Updated Binder configuration
Reloading codemeta from Zenodo
Getting all versions of the record from Zenodo
Versions: {10977609: 'v1.2.3', 5534682: 'v1.2.1', 10800706: 'v1.2.2'}
retrieved codemeta for version 10977609, created: 2024-04-16 09:06:40.154390+00:00, modified: 2024-04-16 09:06:40.340751+00:00
Error getting codemeta: 416 Client Error: REQUESTED_RANGE_NOT_SATISFIABLE for url: https://zenodo.org/api/records/5534682/files/AMIGA-IAA/hcg-16-v1.2.1.zip/content in record Record #5534682 : AMIGA-IAA/hcg-16: Repo synced with Zenodo
retrieved codemeta for version 5534682, created: 2021-09-28 16:46:47.227050+00:00, modified: 2021-10-05 07:23:11.541632+00:00
retrieved codemeta for version 10800706, created: 2024-03-09 17:49:31.773205+00:00, modified: 2024-03-09 17:49:31.929073+00:00
Compute completeness for all versions
Completeness for 10977609 = 37.84%
Completeness for 5534682 = 0.00%
Completeness for 10800706 = 37.84%
Repo: https://github.com/AMIGA-IAA/hcg-16
Reloading SOMEF codemeta from repository
SOftware Metadata Extraction Framework (SOMEF) Command Line Interface

Traceback (most recent call last):
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 84, in __load
    root = nltk.data.find(f"{self.subdir}/{zip_name}")
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/data.py", line 579, in find
    raise LookupError(resource_not_found)
LookupError: 
**********************************************************************
  Resource [93mwordnet[0m not found.
  Please use the NLTK Downloader to obtain the resource:

  [31m>>> import nltk
  >>> nltk.download('wordnet')
  [0m
  For more information see: https://www.nltk.org/data.html

  Attempted to load [93mcorpora/wordnet.zip/wordnet/[0m

  Searched in:
    - '/root/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/share/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/lib/nltk_data'
    - '/usr/share/nltk_data'
    - '/usr/local/share/nltk_data'
    - '/usr/lib/nltk_data'
    - '/usr/local/lib/nltk_data'
**********************************************************************


During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/builds/escape-ossr/rs_quality_checks/.venv/bin/somef", line 10, in <module>
    sys.exit(cli())
             ^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1161, in __call__
    return self.main(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1082, in main
    rv = self.invoke(ctx)
         ^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1697, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1443, in invoke
    return ctx.invoke(self.callback, **ctx.params)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 788, in invoke
    return __callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/somef/__main__.py", line 162, in describe
    from . import somef_cli
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/somef/somef_cli.py", line 11, in <module>
    from . import header_analysis, regular_expressions, process_repository, configuration, process_files, \
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/somef/header_analysis.py", line 19, in <module>
    citation = [Word("citation").synsets[3], Word("reference").synsets[1], Word("cite").synsets[3]]
                ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/textblob/decorators.py", line 24, in __get__
    value = obj.__dict__[self.func.__name__] = self.func(obj)
                                               ^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/textblob/blob.py", line 190, in synsets
    return self.get_synsets(pos=None)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/textblob/blob.py", line 211, in get_synsets
    return _wordnet.synsets(self.string, pos)
           ^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 120, in __getattr__
    self.__load()
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 86, in __load
    raise e
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 81, in __load
    root = nltk.data.find(f"{self.subdir}/{self.__name}")
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/data.py", line 579, in find
    raise LookupError(resource_not_found)
LookupError: 
**********************************************************************
  Resource [93mwordnet[0m not found.
  Please use the NLTK Downloader to obtain the resource:

  [31m>>> import nltk
  >>> nltk.download('wordnet')
  [0m
  For more information see: https://www.nltk.org/data.html

  Attempted to load [93mcorpora/wordnet[0m

  Searched in:
    - '/root/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/share/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/lib/nltk_data'
    - '/usr/share/nltk_data'
    - '/usr/local/share/nltk_data'
    - '/usr/lib/nltk_data'
    - '/usr/local/lib/nltk_data'
**********************************************************************


Creating empty docs/records/10977609/somef_codemeta_10977609.json

Keys	Action
`?`	Open this help
`n`	Next page
`p`	Previous page
`s`	Search

Comparison Report

Comparison between codemeta_10977609.json and somef_codemeta_10977609.json:

Summary

Full Report

Same Values

Differences

Missing Keys in First File:

Missing Keys in Second File:

Completeness Report

10977609

Meta

Data

5534682

Meta

Data

10800706

Meta

Data

Logs

Comparison between `codemeta_10977609.json` and `somef_codemeta_10977609.json`: