11454011 report - OSSR Reports

Repository Information

Repository Name: G-Tomo
Record ID: 11454011
Repository URL: https://github.com/explore-platform/g-tomo
Tool Type: SoftwareSourceCode
Version: 2.0.0

Results

Indicator	generated by	evidence	Value	Run Status	Check passed
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 51.4%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'memoryRequirements', 'operatingSystem', 'processorRequirements', 'releaseNotes', 'softwareRequirements', 'softwareVersion', 'storageRequirements', 'author', 'citation', 'contributor', 'copyrightHolder', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'provider', 'version', 'isPartOf', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'contIntegration', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.	0.5135135135135135	✅	✅
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 51.4%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'memoryRequirements', 'operatingSystem', 'processorRequirements', 'releaseNotes', 'softwareRequirements', 'softwareVersion', 'storageRequirements', 'author', 'citation', 'contributor', 'copyrightHolder', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'provider', 'version', 'isPartOf', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'contIntegration', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.	0.5135135135135135	✅	✅
https://w3id.org/everse/i/indicators/doi_presence	SOMEF	Found DOI: https://doi.org/10.5281/zenodo.10405177 with confidence 100.0% from source https://raw.githubusercontent.com/explore-platform/g-tomo/main/codemeta.json	https://doi.org/10.5281/zenodo.10405177	⚠️	✅
https://w3id.org/everse/i/indicators/codemeta_discrepancy	SOMEF, Codemeta Completeness Tool	Comparison value: 0.5147058823529411, Threshold: 0.5, Status: True	0.5147058823529411	⚠️	✅

Results Output

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.51
Evidence: Codemeta completeness = 51.4%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'memoryRequirements', 'operatingSystem', 'processorRequirements', 'releaseNotes', 'softwareRequirements', 'softwareVersion', 'storageRequirements', 'author', 'citation', 'contributor', 'copyrightHolder', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'provider', 'version', 'isPartOf', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'contIntegration', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.
Output:

{"pass": true, "value": 0.5135135135135135, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/Apache-2.0", "codeRepository": "https://github.com/explore-platform/g-tomo", "contIntegration": "https://github.com/explore-platform/g-tomo", "dateCreated": "2021-01-01", "datePublished": "2021-01-01", "dateModified": "2023-10-01", "downloadUrl": "https://github.com/explore-platform", "issueTracker": "https://github.com/explore-platform/g-tomo/issues", "name": "G-Tomo", "version": "2.0.0", "identifier": "https://doi.org/10.5281/zenodo.10405177", "description": "The G-Tomo scientific data application (SDA) created by the EXPLORE project allows users to extract 1d profiles and 2d maps from the latest 3d dust extinction maps based on Gaia eDR3 and 2MASS data (Lallement et al. 2022).\n", "applicationCategory": "Astronomy", "releaseNotes": "-\n", "funding": "This project has received funding from the European Union\u2019s Horizon 2020 research and innovation programme under grant agreement No 101004214.", "developmentStatus": "active", "isPartOf": "https://explore-platform.eu", "referencePublication": "https://doi.org/10.1051/0004-6361/202243319", "readme": "https://explore-platform.eu/sdas/about/gtomo", "softwareVersion": "2.0.0", "citation": "https://ui.adsabs.harvard.edu/abs/2022A%26A...664A.174V/abstract", "provider": {"@id": "https://explore-platform.eu", "@type": "Organization", "name": "EXPLORE Project - Innovative Scientific Data Exploration and Exploitation Applications for Space Sciences", "url": "https://explore-platform.eu"}, "funder": {"@type": "Organization", "name": "European Commission", "@id": "https://doi.org/10.13039/501100000780"}, "copyrightHolder": {"@type": "Organization", "name": "ACRI-ST - GEPI - Know-Center"}, "keywords": ["Projects: EXPLORE", "Gaia; Content: Astronomy", "Extinction", "Galactic", "Interstellar Medium"], "programmingLanguage": ["Python"], "runtimePlatform": ["Docker"], "operatingSystem": ["Ubuntu 20.04"], "softwareRequirements": ["Visualiser"], "memoryRequirements": ["2048 Mb"], "processorRequirements": ["2 cores"], "storageRequirements": ["5 Gb"], "relatedLink": ["https://gitlab.acri-cwa.fr/project-explore"], "author": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}], "contributor": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}], "maintainer": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}]}, "threshold": 0.2}

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.51
Evidence: Codemeta completeness = 51.4%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'memoryRequirements', 'operatingSystem', 'processorRequirements', 'releaseNotes', 'softwareRequirements', 'softwareVersion', 'storageRequirements', 'author', 'citation', 'contributor', 'copyrightHolder', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'provider', 'version', 'isPartOf', 'description', 'identifier', 'name', 'relatedLink', 'identifier', 'name', 'maintainer', 'contIntegration', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.
Output:

{"pass": true, "value": 0.5135135135135135, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/Apache-2.0", "codeRepository": "https://github.com/explore-platform/g-tomo", "contIntegration": "https://github.com/explore-platform/g-tomo", "dateCreated": "2021-01-01", "datePublished": "2021-01-01", "dateModified": "2023-10-01", "downloadUrl": "https://github.com/explore-platform", "issueTracker": "https://github.com/explore-platform/g-tomo/issues", "name": "G-Tomo", "version": "2.0.0", "identifier": "https://doi.org/10.5281/zenodo.10405177", "description": "The G-Tomo scientific data application (SDA) created by the EXPLORE project allows users to extract 1d profiles and 2d maps from the latest 3d dust extinction maps based on Gaia eDR3 and 2MASS data (Lallement et al. 2022).\n", "applicationCategory": "Astronomy", "releaseNotes": "-\n", "funding": "This project has received funding from the European Union\u2019s Horizon 2020 research and innovation programme under grant agreement No 101004214.", "developmentStatus": "active", "isPartOf": "https://explore-platform.eu", "referencePublication": "https://doi.org/10.1051/0004-6361/202243319", "readme": "https://explore-platform.eu/sdas/about/gtomo", "softwareVersion": "2.0.0", "citation": "https://ui.adsabs.harvard.edu/abs/2022A%26A...664A.174V/abstract", "provider": {"@id": "https://explore-platform.eu", "@type": "Organization", "name": "EXPLORE Project - Innovative Scientific Data Exploration and Exploitation Applications for Space Sciences", "url": "https://explore-platform.eu"}, "funder": {"@type": "Organization", "name": "European Commission", "@id": "https://doi.org/10.13039/501100000780"}, "copyrightHolder": {"@type": "Organization", "name": "ACRI-ST - GEPI - Know-Center"}, "keywords": ["Projects: EXPLORE", "Gaia; Content: Astronomy", "Extinction", "Galactic", "Interstellar Medium"], "programmingLanguage": ["Python"], "runtimePlatform": ["Docker"], "operatingSystem": ["Ubuntu 20.04"], "softwareRequirements": ["Visualiser"], "memoryRequirements": ["2048 Mb"], "processorRequirements": ["2 cores"], "storageRequirements": ["5 Gb"], "relatedLink": ["https://gitlab.acri-cwa.fr/project-explore"], "author": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}], "contributor": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}], "maintainer": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}]}, "threshold": 0.5}

https://w3id.org/everse/i/indicators/codemeta_discrepancy

Status: PotentialActionStatus
Value: 0.51
Evidence: Comparison value: 0.5147058823529411, Threshold: 0.5, Status: True
Output:

{"pass": true, "value": 0.5147058823529411, "threshold": 0.5, "results": {"completeness_1": 0.5135135135135135, "codemeta_version_1": "codemeta-2.0", "codemeta_version_2": "codemeta-3.0", "completeness_2": 0.28378378378378377, "missing_keys_1": ["targetProduct", "applicationSubCategory", "fileSize", "installUrl", "permissions", "softwareHelp", "supportingData", "copyrightYear", "editor", "encoding", "fileFormat", "producer", "publisher", "sponsor", "isAccessibleForFree", "hasPart", "position", "sameAs", "url", "givenName", "familyName", "email", "affiliation", "address", "", "", "softwareSuggestions", "buildInstructions", "embargoDate", "creator", "", "", "", "endDate", "roleName", "startDate"], "missing_keys_2": ["runtimePlatform", "targetProduct", "applicationCategory", "applicationSubCategory", "fileSize", "installUrl", "memoryRequirements", "operatingSystem", "permissions", "processorRequirements", "releaseNotes", "softwareHelp", "storageRequirements", "supportingData", "citation", "contributor", "copyrightHolder", "copyrightYear", "editor", "encoding", "fileFormat", "funder", "producer", "provider", "publisher", "sponsor", "version", "isAccessibleForFree", "isPartOf", "hasPart", "position", "sameAs", "relatedLink", "givenName", "familyName", "email", "affiliation", "address", "", "", "softwareSuggestions", "maintainer", "buildInstructions", "developmentStatus", "embargoEndDate", "funding", "creator", "review", "reviewAspect", "reviewBody", "endDate", "roleName", "startDate"], "existing_keys_1": ["codeRepository", "programmingLanguage", "runtimePlatform", "applicationCategory", "downloadUrl", "memoryRequirements", "operatingSystem", "processorRequirements", "releaseNotes", "softwareRequirements", "softwareVersion", "storageRequirements", "author", "citation", "contributor", "copyrightHolder", "dateCreated", "dateModified", "datePublished", "funder", "keywords", "license", "provider", "version", "isPartOf", "description", "identifier", "name", "relatedLink", "identifier", "name", "maintainer", "contIntegration", "developmentStatus", "funding", "issueTracker", "referencePublication", "readme"], "existing_keys_2": ["codeRepository", "programmingLanguage", "downloadUrl", "softwareRequirements", "softwareVersion", "author", "dateCreated", "dateModified", "datePublished", "keywords", "license", "description", "identifier", "name", "url", "identifier", "name", "continuousIntegration", "issueTracker", "referencePublication", "readme"], "differences": {"runtimePlatform": {"value_in_1": ["Docker"], "value_in_2": null}, "applicationCategory": {"value_in_1": "Astronomy", "value_in_2": null}, "downloadUrl": {"value_in_1": "https://github.com/explore-platform", "value_in_2": "https://github.com/explore-platform/g-tomo/releases"}, "memoryRequirements": {"value_in_1": ["2048 Mb"], "value_in_2": null}, "operatingSystem": {"value_in_1": ["Ubuntu 20.04"], "value_in_2": null}, "processorRequirements": {"value_in_1": ["2 cores"], "value_in_2": null}, "releaseNotes": {"value_in_1": "-\n", "value_in_2": null}, "softwareRequirements": {"value_in_1": ["Visualiser"], "value_in_2": [{"name": "astropy"}, {"name": "astroquery"}, {"name": "dash"}, {"name": "dash-renderer"}, {"name": "dash-bootstrap-components"}, {"name": "dash-core-components"}, {"name": "dash-html-components"}, {"name": "dash-table"}, {"name": "flask"}, {"name": "Flask-Caching"}, {"name": "h5py"}, {"name": "matplotlib"}, {"name": "numpy"}, {"name": "pandas"}, {"name": "plotly"}, {"name": "scipy"}, {"name": "werkzeug", "version": "==2.0.3"}, "Visualiser"]}, "softwareVersion": {"value_in_1": "2.0.0", "value_in_2": "v2"}, "storageRequirements": {"value_in_1": ["5 Gb"], "value_in_2": null}, "author": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}], "value_in_2": [{"@type": "Organization", "@id": "https://github.com/explore-platform"}, {"@type": "Person", "email": "nick.cox@acri-st.fr", "name": null}]}, "citation": {"value_in_1": "https://ui.adsabs.harvard.edu/abs/2022A%26A...664A.174V/abstract", "value_in_2": null}, "contributor": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}], "value_in_2": null}, "copyrightHolder": {"value_in_1": {"@type": "Organization", "name": "ACRI-ST - GEPI - Know-Center"}, "value_in_2": null}, "dateCreated": {"value_in_1": "2021-01-01", "value_in_2": "2023-07-20"}, "dateModified": {"value_in_1": "2023-10-01", "value_in_2": "2024-06-03"}, "datePublished": {"value_in_1": "2021-01-01", "value_in_2": "2024-06-03"}, "funder": {"value_in_1": {"@type": "Organization", "name": "European Commission", "@id": "https://doi.org/10.13039/501100000780"}, "value_in_2": null}, "keywords": {"value_in_1": ["Projects: EXPLORE", "Gaia; Content: Astronomy", "Extinction", "Galactic", "Interstellar Medium"], "value_in_2": "dust, explore, gaiadr3, interstellar-medium"}, "license": {"value_in_1": "https://spdx.org/licenses/Apache-2.0", "value_in_2": {"name": "Apache License 2.0", "url": "https://raw.githubusercontent.com/explore-platform/g-tomo/main/LICENSE", "identifier": "https://spdx.org/licenses/Apache-2.0", "spdx_id": "Apache-2.0"}}, "provider": {"value_in_1": {"@id": "https://explore-platform.eu", "@type": "Organization", "name": "EXPLORE Project - Innovative Scientific Data Exploration and Exploitation Applications for Space Sciences", "url": "https://explore-platform.eu"}, "value_in_2": null}, "version": {"value_in_1": "2.0.0", "value_in_2": null}, "isPartOf": {"value_in_1": "https://explore-platform.eu", "value_in_2": null}, "description": {"value_in_1": "The G-Tomo scientific data application (SDA) created by the EXPLORE project allows users to extract 1d profiles and 2d maps from the latest 3d dust extinction maps based on Gaia eDR3 and 2MASS data (Lallement et al. 2022).\n", "value_in_2": ["The G-Tomo scientific data application (SDA) created by the EXPLORE project allows users to extract 1d profiles and 2d maps from the latest 3d dust extinction maps based on Gaia eDR3 and 2MASS data (Lallement et al. 2022).\n"]}, "identifier": {"value_in_1": "https://doi.org/10.5281/zenodo.10405177", "value_in_2": ["https://doi.org/10.5281/zenodo.10405177", "https://zenodo.org/doi/10.5281/zenodo.11454010"]}, "name": {"value_in_1": "G-Tomo", "value_in_2": "g-tomo"}, "url": {"value_in_1": null, "value_in_2": ["https://explore-platform.eu"]}, "relatedLink": {"value_in_1": ["https://gitlab.acri-cwa.fr/project-explore"], "value_in_2": null}, "maintainer": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-7926-4492", "givenName": "Nick", "familyName": "Cox", "email": "nick.cox@acri-st.fr", "affiliation": {"@type": "Organization", "name": "ACRI-ST"}}], "value_in_2": null}, "contIntegration": {"value_in_1": "https://github.com/explore-platform/g-tomo", "value_in_2": null}, "developmentStatus": {"value_in_1": "active", "value_in_2": null}, "funding": {"value_in_1": "This project has received funding from the European Union\u2019s Horizon 2020 research and innovation programme under grant agreement No 101004214.", "value_in_2": null}, "referencePublication": {"value_in_1": "https://doi.org/10.1051/0004-6361/202243319", "value_in_2": [{"@type": "ScholarlyArticle", "name": "g-tomo", "identifier": null, "url": "https://explore-platform.eu", "author": [{"@type": "Person", "familyName": "Cox", "givenName": "Nick", "@id": "https://orcid.org/0000-0002-7926-4492"}], "datePublished": "2024"}]}}, "equivalences": {"codeRepository": "https://github.com/explore-platform/g-tomo", "programmingLanguage": ["Python"], "targetProduct": null, "applicationSubCategory": null, "fileSize": null, "installUrl": null, "permissions": null, "softwareHelp": null, "supportingData": null, "copyrightYear": null, "editor": null, "encoding": null, "fileFormat": null, "producer": null, "publisher": null, "sponsor": null, "isAccessibleForFree": null, "hasPart": null, "position": null, "sameAs": null, "givenName": null, "familyName": null, "email": null, "affiliation": null, "address": null, "": null, "softwareSuggestions": null, "buildInstructions": null, "embargoDate": null, "issueTracker": "https://github.com/explore-platform/g-tomo/issues", "readme": "https://explore-platform.eu/sdas/about/gtomo", "creator": null, "endDate": null, "roleName": null, "startDate": null}}}

Logs

Log File: docs/records/11454011/11454011_codemeta_completeness_tool_log.txt

2026-03-05 09:07:17,887 codemeta_completeness_tool.py:72 INFO [codemeta completeness tool] Running Codemeta Completeness Tool on record ID: 11454011

Log File: docs/records/11454011/11454011_somef_log.txt

2026-03-05 09:07:09,037 somef_tool.py:140 INFO Running SOMEF on repository: https://github.com/explore-platform/g-tomo
2026-03-05 09:07:17,883 somef_utils.py:43 INFO SOftware Metadata Extraction Framework (SOMEF) Command Line Interface
CODEMETA PARSER - Processing file: /tmp/tmpz5pk4yd0/explore-platform_g-tomo/g-tomo-main/codemeta.json
CODEMETA PARSER - Source: https://raw.githubusercontent.com/explore-platform/g-tomo/main/codemeta.json
Saving json data to docs/records/11454011/11454011_somef.json
Success

2026-03-05 09:07:17,883 somef_utils.py:45 ERROR 05-Mar-26 09:07:14-DEBUG-Starting new HTTPS connection (1): github.com:443
05-Mar-26 09:07:14-DEBUG-https://github.com:443 "GET /api/v4/projects HTTP/1.1" 404 9
05-Mar-26 09:07:14-INFO-Loading Repository https://github.com/explore-platform/g-tomo Information....
05-Mar-26 09:07:14-DEBUG-Starting new HTTPS connection (1): api.github.com:443
05-Mar-26 09:07:15-DEBUG-https://api.github.com:443 "GET /repos/explore-platform/g-tomo HTTP/1.1" 200 1505
05-Mar-26 09:07:15-INFO-Remaining GitHub API requests: 35 ### Next rate limit reset at: 2026-03-05 09:55:32
05-Mar-26 09:07:15-DEBUG-Starting new HTTPS connection (1): api.github.com:443
05-Mar-26 09:07:15-DEBUG-https://api.github.com:443 "GET /repos/explore-platform/g-tomo/languages HTTP/1.1" 200 74
05-Mar-26 09:07:15-INFO-Remaining GitHub API requests: 34 ### Next rate limit reset at: 2026-03-05 09:55:32
05-Mar-26 09:07:15-DEBUG-Starting new HTTPS connection (1): api.github.com:443
05-Mar-26 09:07:15-DEBUG-https://api.github.com:443 "GET /repos/explore-platform/g-tomo/releases?per_page=100&page=1 HTTP/1.1" 200 631
05-Mar-26 09:07:15-INFO-Remaining GitHub API requests: 33 ### Next rate limit reset at: 2026-03-05 09:55:32
05-Mar-26 09:07:15-DEBUG-Starting new HTTPS connection (1): api.github.com:443
05-Mar-26 09:07:15-DEBUG-https://api.github.com:443 "GET /repos/explore-platform/g-tomo/releases?per_page=100&page=2 HTTP/1.1" 200 2
05-Mar-26 09:07:15-INFO-Remaining GitHub API requests: 32 ### Next rate limit reset at: 2026-03-05 09:55:32
05-Mar-26 09:07:15-WARNING-Ignoring empty value in release for description
05-Mar-26 09:07:15-INFO-Repository information successfully loaded.

05-Mar-26 09:07:15-INFO-Downloading https://github.com/explore-platform/g-tomo/archive/main.zip
05-Mar-26 09:07:15-DEBUG-Starting new HTTPS connection (1): github.com:443
05-Mar-26 09:07:15-DEBUG-https://github.com:443 "GET /explore-platform/g-tomo/archive/main.zip HTTP/1.1" 302 0
05-Mar-26 09:07:15-DEBUG-Starting new HTTPS connection (1): codeload.github.com:443
05-Mar-26 09:07:15-DEBUG-https://codeload.github.com:443 "GET /explore-platform/g-tomo/zip/refs/heads/main HTTP/1.1" 200 None
05-Mar-26 09:07:15-WARNING-No Content-Length header for https://github.com/explore-platform/g-tomo/archive/main.zip. Proceeding with download anyway (unable to estimate size).
05-Mar-26 09:07:15-DEBUG-Starting new HTTPS connection (1): github.com:443
05-Mar-26 09:07:15-DEBUG-https://github.com:443 "GET /explore-platform/g-tomo/archive/main.zip HTTP/1.1" 302 0
05-Mar-26 09:07:15-DEBUG-Starting new HTTPS connection (1): codeload.github.com:443
05-Mar-26 09:07:15-DEBUG-https://codeload.github.com:443 "GET /explore-platform/g-tomo/zip/refs/heads/main HTTP/1.1" 200 None
05-Mar-26 09:07:16-INFO-############### Processing package file: requirements.txt ############### 
05-Mar-26 09:07:16-INFO-############### Processing package file: requirements.txt ############### 
05-Mar-26 09:07:16-INFO-Extracting information using headers
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:112: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.

For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.


  df['Content'].replace('', np.nan, inplace=True)
05-Mar-26 09:07:16-INFO-Labeling headers.
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:224: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
A typical example is when you are setting values in a column of a DataFrame, like:

df["col"][row_indexer] = value

Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy

  data['Group'].iloc[0] = ['unknown']
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:230: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
A typical example is when you are setting values in a column of a DataFrame, like:

df["col"][row_indexer] = value

Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy

  data['Group'].iloc[0] = np.NaN
05-Mar-26 09:07:16-INFO-Header information extracted.
05-Mar-26 09:07:16-INFO-Splitting text into valid excerpts for classification
05-Mar-26 09:07:16-INFO-Extraction of bibtex citation from readme completed. 

05-Mar-26 09:07:16-INFO-Text Successfully split.
05-Mar-26 09:07:17-INFO-Classifying excerpts for the category description
05-Mar-26 09:07:17-INFO-Checking thresholds for classified excerpts.
05-Mar-26 09:07:17-INFO-All excerpts below the threshold have been removed.
05-Mar-26 09:07:17-DEBUG-Starting new HTTPS connection (1): github.com:443
05-Mar-26 09:07:17-DEBUG-https://github.com:443 "GET /explore-platform/g-tomo/wiki HTTP/1.1" 302 0
05-Mar-26 09:07:17-INFO-Completed extracting regular expressions

Keys	Action
`?`	Open this help
`n`	Next page
`p`	Previous page
`s`	Search