18505251 report - OSSR Reports

Repository Information

Repository Name: agnpy
Record ID: 18505251
Repository URL: https://github.com/cosimoNigro/agnpy
Tool Type: SoftwareSourceCode
Version: 0.5.0

Results

Indicator	generated by	evidence	Value	Run Status	Check passed
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'isPartOf', 'description', 'identifier', 'name', 'identifier', 'name', 'maintainer', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.	0.3783783783783784	✅	✅
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'isPartOf', 'description', 'identifier', 'name', 'identifier', 'name', 'maintainer', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.	0.3783783783783784	✅	❌
https://w3id.org/everse/i/indicators/doi_presence	SOMEF	Found DOI: 10.5281/zenodo.4055175 with confidence 100.0% from source https://raw.githubusercontent.com/cosimoNigro/agnpy/master/codemeta.json	10.5281/zenodo.4055175	⚠️	✅
https://w3id.org/everse/i/indicators/codemeta_discrepancy	SOMEF, Codemeta Completeness Tool	Comparison value: 0.6470588235294118, Threshold: 0.5, Status: True	0.6470588235294118	⚠️	✅

Results Output

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.38
Evidence: Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'isPartOf', 'description', 'identifier', 'name', 'identifier', 'name', 'maintainer', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.
Output:

{"pass": true, "value": 0.3783783783783784, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/BSD-3-Clause", "dateCreated": "2019-12-17", "datePublished": "2021-04-14", "dateModified": "2023-02-12", "codeRepository": "https://github.com/cosimoNigro/agnpy", "issueTracker": "https://github.com/cosimoNigro/agnpy/issues", "downloadUrl": "https://github.com/cosimoNigro/agnpy/releases/tag/v0.5.0", "name": "agnpy", "version": "0.5.0", "identifier": "10.5281/zenodo.4055175", "description": "agnpy is a python package focusing on the computation of the radiative processes of relativistic particles accelerated in the jets of Active Galactic Nuclei (AGN). It includes classes describing the galaxy components responsible for line and thermal emission and calculates the absorption due to gamma-gamma pair production on soft (IR-UV) photon fields.", "applicationCategory": "Astronomy", "funding": "ESCAPE 824064", "developmentStatus": "active", "isPartOf": "https://www.astropy.org/affiliated/", "referencePublication": "https://doi.org/10.1051/0004-6361/202142000", "readme": "https://agnpy.readthedocs.io/en/latest/", "softwareVersion": "0.5.0", "funder": {"@type": "Organization", "name": "European Union's Horizon 2020 research and innovation programme"}, "keywords": ["CTA", "astroparticle physics", "jupyter-notebook", "active galactic nuclei", "blazars", "radio jets", "radio active galactic nuclei", "radiative processes"], "programmingLanguage": ["Python 3"], "operatingSystem": ["Linux", "MacOs"], "softwareRequirements": ["https://github.com/cosimoNigro/agnpy#dependencies"], "author": [{"@type": "Person", "@id": "https://orcid.org/0000-0001-8375-1907", "givenName": "Cosimo", "familyName": "Nigro", "email": "cosimo.nigro@ifae.es", "affiliation": {"@type": "Organization", "name": "Institut de F\u00edsica d'Altes Energies (IFAE)"}}], "contributor": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-1659-5374", "givenName": "Julian", "familyName": "Sitarek", "email": "jsitarek@uni.lodz.pl", "affiliation": {"@type": "Organization", "name": "University of Lodz"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-4183-391X", "givenName": "Pawel", "familyName": "Gliwny", "email": "p.gliwny@gmail.com", "affiliation": {"@type": "Organization", "name": "University of Lodz"}}, {"@type": "Person", "givenName": "David", "familyName": "Sanchez", "email": "david.sanchez@lapp.in2p3.fr", "affiliation": {"@type": "Organization", "name": "Univ. Savoie Mont Blanc, CNRS, LAPP"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0001-7988-8919", "givenName": "Matthew", "familyName": "Craig", "email": "mattwcraig@gmail.com", "affiliation": {"@type": "Organization", "name": "Minnesota State University"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-5686-2078", "givenName": "Thomas", "familyName": "Vuillaume", "email": "vuillaume@lapp.in2p3.fr", "affiliation": {"@type": "Organization", "name": "Univ. Savoie Mont Blanc, CNRS, LAPP"}}, {"@type": "Person", "givenName": "Ilaria", "familyName": "Viale", "email": "ilaria.viale.1@studenti.unipd.it", "affiliation": {"@type": "Organization", "name": "Universit\u00e0 degli Studi di Padova"}}, {"@type": "Person", "givenName": "Dimitrios ", "familyName": "Maniadakis", "email": "dimitrioskonstantinos.maniadakis@studenti.unipd.it", "affiliation": {"@type": "Organization", "name": "Universit\u00e0 degli Studi di Padova"}}], "maintainer": [{"@type": "Person", "@id": "https://orcid.org/0000-0001-8375-1907", "givenName": "Cosimo", "familyName": "Nigro", "email": "cosimo.nigro@ifae.es", "affiliation": {"@type": "Organization", "name": "Institut de F\u00edsica d'Altes Energies (IFAE)"}}]}, "threshold": 0.2}

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.38
Evidence: Codemeta completeness = 37.8%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'softwareVersion', 'author', 'contributor', 'dateCreated', 'dateModified', 'datePublished', 'funder', 'keywords', 'license', 'version', 'isPartOf', 'description', 'identifier', 'name', 'identifier', 'name', 'maintainer', 'developmentStatus', 'funding', 'issueTracker', 'referencePublication', 'readme'] keys in codemeta file.
Output:

{"pass": false, "value": 0.3783783783783784, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/BSD-3-Clause", "dateCreated": "2019-12-17", "datePublished": "2021-04-14", "dateModified": "2023-02-12", "codeRepository": "https://github.com/cosimoNigro/agnpy", "issueTracker": "https://github.com/cosimoNigro/agnpy/issues", "downloadUrl": "https://github.com/cosimoNigro/agnpy/releases/tag/v0.5.0", "name": "agnpy", "version": "0.5.0", "identifier": "10.5281/zenodo.4055175", "description": "agnpy is a python package focusing on the computation of the radiative processes of relativistic particles accelerated in the jets of Active Galactic Nuclei (AGN). It includes classes describing the galaxy components responsible for line and thermal emission and calculates the absorption due to gamma-gamma pair production on soft (IR-UV) photon fields.", "applicationCategory": "Astronomy", "funding": "ESCAPE 824064", "developmentStatus": "active", "isPartOf": "https://www.astropy.org/affiliated/", "referencePublication": "https://doi.org/10.1051/0004-6361/202142000", "readme": "https://agnpy.readthedocs.io/en/latest/", "softwareVersion": "0.5.0", "funder": {"@type": "Organization", "name": "European Union's Horizon 2020 research and innovation programme"}, "keywords": ["CTA", "astroparticle physics", "jupyter-notebook", "active galactic nuclei", "blazars", "radio jets", "radio active galactic nuclei", "radiative processes"], "programmingLanguage": ["Python 3"], "operatingSystem": ["Linux", "MacOs"], "softwareRequirements": ["https://github.com/cosimoNigro/agnpy#dependencies"], "author": [{"@type": "Person", "@id": "https://orcid.org/0000-0001-8375-1907", "givenName": "Cosimo", "familyName": "Nigro", "email": "cosimo.nigro@ifae.es", "affiliation": {"@type": "Organization", "name": "Institut de F\u00edsica d'Altes Energies (IFAE)"}}], "contributor": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-1659-5374", "givenName": "Julian", "familyName": "Sitarek", "email": "jsitarek@uni.lodz.pl", "affiliation": {"@type": "Organization", "name": "University of Lodz"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-4183-391X", "givenName": "Pawel", "familyName": "Gliwny", "email": "p.gliwny@gmail.com", "affiliation": {"@type": "Organization", "name": "University of Lodz"}}, {"@type": "Person", "givenName": "David", "familyName": "Sanchez", "email": "david.sanchez@lapp.in2p3.fr", "affiliation": {"@type": "Organization", "name": "Univ. Savoie Mont Blanc, CNRS, LAPP"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0001-7988-8919", "givenName": "Matthew", "familyName": "Craig", "email": "mattwcraig@gmail.com", "affiliation": {"@type": "Organization", "name": "Minnesota State University"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-5686-2078", "givenName": "Thomas", "familyName": "Vuillaume", "email": "vuillaume@lapp.in2p3.fr", "affiliation": {"@type": "Organization", "name": "Univ. Savoie Mont Blanc, CNRS, LAPP"}}, {"@type": "Person", "givenName": "Ilaria", "familyName": "Viale", "email": "ilaria.viale.1@studenti.unipd.it", "affiliation": {"@type": "Organization", "name": "Universit\u00e0 degli Studi di Padova"}}, {"@type": "Person", "givenName": "Dimitrios ", "familyName": "Maniadakis", "email": "dimitrioskonstantinos.maniadakis@studenti.unipd.it", "affiliation": {"@type": "Organization", "name": "Universit\u00e0 degli Studi di Padova"}}], "maintainer": [{"@type": "Person", "@id": "https://orcid.org/0000-0001-8375-1907", "givenName": "Cosimo", "familyName": "Nigro", "email": "cosimo.nigro@ifae.es", "affiliation": {"@type": "Organization", "name": "Institut de F\u00edsica d'Altes Energies (IFAE)"}}]}, "threshold": 0.5}

https://w3id.org/everse/i/indicators/codemeta_discrepancy

Status: PotentialActionStatus
Value: 0.65
Evidence: Comparison value: 0.6470588235294118, Threshold: 0.5, Status: True
Output:

{"pass": true, "value": 0.6470588235294118, "threshold": 0.5, "results": {"completeness_1": 0.3783783783783784, "codemeta_version_1": "codemeta-2.0", "codemeta_version_2": "codemeta-3.0", "completeness_2": 0.2972972972972973, "missing_keys_1": ["runtimePlatform", "targetProduct", "applicationSubCategory", "fileSize", "installUrl", "memoryRequirements", "permissions", "processorRequirements", "releaseNotes", "softwareHelp", "storageRequirements", "supportingData", "citation", "copyrightHolder", "copyrightYear", "editor", "encoding", "fileFormat", "producer", "provider", "publisher", "sponsor", "isAccessibleForFree", "hasPart", "position", "sameAs", "url", "relatedLink", "givenName", "familyName", "email", "affiliation", "address", "", "", "softwareSuggestions", "contIntegration", "buildInstructions", "embargoDate", "creator", "", "", "", "endDate", "roleName", "startDate"], "missing_keys_2": ["runtimePlatform", "targetProduct", "applicationCategory", "applicationSubCategory", "fileSize", "installUrl", "memoryRequirements", "operatingSystem", "permissions", "processorRequirements", "softwareHelp", "storageRequirements", "supportingData", "citation", "contributor", "copyrightHolder", "copyrightYear", "editor", "encoding", "fileFormat", "funder", "producer", "provider", "publisher", "sponsor", "version", "isAccessibleForFree", "isPartOf", "hasPart", "position", "sameAs", "relatedLink", "givenName", "familyName", "email", "affiliation", "address", "", "", "softwareSuggestions", "maintainer", "developmentStatus", "embargoEndDate", "funding", "referencePublication", "creator", "review", "reviewAspect", "reviewBody", "endDate", "roleName", "startDate"], "existing_keys_1": ["codeRepository", "programmingLanguage", "applicationCategory", "downloadUrl", "operatingSystem", "softwareRequirements", "softwareVersion", "author", "contributor", "dateCreated", "dateModified", "datePublished", "funder", "keywords", "license", "version", "isPartOf", "description", "identifier", "name", "identifier", "name", "maintainer", "developmentStatus", "funding", "issueTracker", "referencePublication", "readme"], "existing_keys_2": ["codeRepository", "programmingLanguage", "downloadUrl", "releaseNotes", "softwareRequirements", "softwareVersion", "author", "dateCreated", "dateModified", "datePublished", "keywords", "license", "description", "identifier", "name", "url", "identifier", "name", "continuousIntegration", "buildInstructions", "issueTracker", "readme"], "differences": {"programmingLanguage": {"value_in_1": ["Python 3"], "value_in_2": ["Jupyter Notebook", "Python", "Python 3"]}, "applicationCategory": {"value_in_1": "Astronomy", "value_in_2": null}, "downloadUrl": {"value_in_1": "https://github.com/cosimoNigro/agnpy/releases/tag/v0.5.0", "value_in_2": "https://github.com/cosimoNigro/agnpy/releases"}, "operatingSystem": {"value_in_1": ["Linux", "MacOs"], "value_in_2": null}, "releaseNotes": {"value_in_1": null, "value_in_2": "## Time evolution\r\n\r\nThe major feature of this release is the addition of time-evolution capabilities, enabling the tracing of time-dependent changes in the electron distribution within a Blob. This time evolution may be driven by particle injection or escape, or by energy-changing processes such as synchrotron or SSC cooling. See the reference documentation for a complete description of the `TimeEvolution` class.\r\n\r\n## Other changes\r\n\r\n* Fix energy shape by @pivosb in #131\r\n* Do not automatically compute the luminosity distance from the redshift by @cosimoNigro in #138\r\n* Fix the issues with the InterpolatedDistributions by @cosimoNigro in #145\r\n* added pre-commit hooks with isort, black and flake8 by @cosimoNigro in #152\r\n* added cosmology as an optional argument instead of d_L by @cosimoNigro in #151\r\n* Add a function for integrating SED flux, for different types of radiative processes by @grzegorzbor in #153\r\n* Moved the tests in the respective submodule subdirectories by @cosimoNigro in #154\r\n* spectra documentation fix by @grzegorzbor in #156\r\n* Update test section in README.md by @morcuended in #158\r\n* Fixing not loading data with sherpa without declaring a systematics dictionary by @cosimoNigro in #165\r\n* documentation fix - missing division by the speed of light in the formula by @grzegorzbor in #168\r\n* documentation fixes for spectral constraints by @grzegorzbor in #169\r\n* Fix doc snippet about EBL models by @HealthyPear in #180\r\n* Update readthedocs.yaml config by @morcuended in #171\r\n* Fix EBL absorption and interpolation, add a comparison with Gammapy by @cosimoNigro in #182\r\n* fixing logging suppression by @cosimoNigro in #186\r\n* Updated github action to automatically upload to pypi by @cosimoNigro in #185\r\n* Bumping up python version in readthedocs configuration files by @cosimoNigro in #192"}, "softwareRequirements": {"value_in_1": ["https://github.com/cosimoNigro/agnpy#dependencies"], "value_in_2": [{"name": "sphinx", "version": ">=4.3.0"}, {"name": "sphinx-astropy"}, {"name": "nbsphinx"}, {"name": "ipython"}, {"name": "ipykernel"}, {"name": "docutils"}, {"name": "sphinx-rtd-theme", "version": ">=0.5.1"}, "https://github.com/cosimoNigro/agnpy#dependencies", "astropy>=7.0", "numpy>=1.24,<2.3", "pandas>=1.5", "scipy>=1.14", "pyyaml>=6.0", "matplotlib>=3.9.1", "sherpa", "pre-commit", "gammapy>=1.3", "setuptools>=61.0", "wheel", "The only dependencies are:  * [numpy](https://numpy.org) managing the numerical computation;  * [astropy](https://www.astropy.org) managing physical units and astronomical distances.  * [matplotlib](https://matplotlib.org) for visualisation and reproduction of the tutorials.  * [scipy](https://www.scipy.org/) for interpolation"]}, "softwareVersion": {"value_in_1": "0.5.0", "value_in_2": "v0.5.0"}, "author": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0001-8375-1907", "givenName": "Cosimo", "familyName": "Nigro", "email": "cosimo.nigro@ifae.es", "affiliation": {"@type": "Organization", "name": "Institut de F\u00edsica d'Altes Energies (IFAE)"}}], "value_in_2": [{"@type": "Person", "@id": "https://github.com/cosimoNigro"}, {"@type": "Person", "email": "cosimo.nigro@ifae.es", "name": null}, {"@type": "Person", "email": "cosimonigro2@gmail.com.com", "name": "Cosimo Nigro"}]}, "contributor": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0002-1659-5374", "givenName": "Julian", "familyName": "Sitarek", "email": "jsitarek@uni.lodz.pl", "affiliation": {"@type": "Organization", "name": "University of Lodz"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-4183-391X", "givenName": "Pawel", "familyName": "Gliwny", "email": "p.gliwny@gmail.com", "affiliation": {"@type": "Organization", "name": "University of Lodz"}}, {"@type": "Person", "givenName": "David", "familyName": "Sanchez", "email": "david.sanchez@lapp.in2p3.fr", "affiliation": {"@type": "Organization", "name": "Univ. Savoie Mont Blanc, CNRS, LAPP"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0001-7988-8919", "givenName": "Matthew", "familyName": "Craig", "email": "mattwcraig@gmail.com", "affiliation": {"@type": "Organization", "name": "Minnesota State University"}}, {"@type": "Person", "@id": "https://orcid.org/0000-0002-5686-2078", "givenName": "Thomas", "familyName": "Vuillaume", "email": "vuillaume@lapp.in2p3.fr", "affiliation": {"@type": "Organization", "name": "Univ. Savoie Mont Blanc, CNRS, LAPP"}}, {"@type": "Person", "givenName": "Ilaria", "familyName": "Viale", "email": "ilaria.viale.1@studenti.unipd.it", "affiliation": {"@type": "Organization", "name": "Universit\u00e0 degli Studi di Padova"}}, {"@type": "Person", "givenName": "Dimitrios ", "familyName": "Maniadakis", "email": "dimitrioskonstantinos.maniadakis@studenti.unipd.it", "affiliation": {"@type": "Organization", "name": "Universit\u00e0 degli Studi di Padova"}}], "value_in_2": null}, "dateModified": {"value_in_1": "2023-02-12", "value_in_2": "2026-03-04"}, "datePublished": {"value_in_1": "2021-04-14", "value_in_2": "2020-07-27"}, "funder": {"value_in_1": {"@type": "Organization", "name": "European Union's Horizon 2020 research and innovation programme"}, "value_in_2": null}, "keywords": {"value_in_1": ["CTA", "astroparticle physics", "jupyter-notebook", "active galactic nuclei", "blazars", "radio jets", "radio active galactic nuclei", "radiative processes"], "value_in_2": "agn, astropy, blazar, jets, numpy, python, radiative-processes"}, "license": {"value_in_1": "https://spdx.org/licenses/BSD-3-Clause", "value_in_2": {"name": "BSD 2-Clause", "url": "https://raw.githubusercontent.com/cosimoNigro/agnpy/master/LICENSE", "identifier": "https://spdx.org/licenses/BSD-2-Clause", "spdx_id": "BSD-2-Clause"}}, "version": {"value_in_1": "0.5.0", "value_in_2": null}, "isPartOf": {"value_in_1": "https://www.astropy.org/affiliated/", "value_in_2": null}, "description": {"value_in_1": "agnpy is a python package focusing on the computation of the radiative processes of relativistic particles accelerated in the jets of Active Galactic Nuclei (AGN). It includes classes describing the galaxy components responsible for line and thermal emission and calculates the absorption due to gamma-gamma pair production on soft (IR-UV) photon fields.", "value_in_2": ["agnpy is a python package focusing on the computation of the radiative processes of relativistic particles accelerated in the jets of Active Galactic Nuclei (AGN). It includes classes describing the galaxy components responsible for line and thermal emission and calculates the absorption due to gamma-gamma pair production on soft (IR-UV) photon fields."]}, "identifier": {"value_in_1": "10.5281/zenodo.4055175", "value_in_2": ["10.5281/zenodo.4055175", "https://doi.org/10.5281/zenodo.4055175"]}, "url": {"value_in_1": null, "value_in_2": ["https://agnpy.readthedocs.io/en/latest/", "https://github.com/cosimoNigro/agnpy"]}, "maintainer": {"value_in_1": [{"@type": "Person", "@id": "https://orcid.org/0000-0001-8375-1907", "givenName": "Cosimo", "familyName": "Nigro", "email": "cosimo.nigro@ifae.es", "affiliation": {"@type": "Organization", "name": "Institut de F\u00edsica d'Altes Energies (IFAE)"}}], "value_in_2": null}, "buildInstructions": {"value_in_1": null, "value_in_2": ["https://agnpy.readthedocs.io/en/latest/", "https://readthedocs.org/projects/agnpy/badge/?version=latest", "https://agnpy.readthedocs.io/"]}, "developmentStatus": {"value_in_1": "active", "value_in_2": null}, "funding": {"value_in_1": "ESCAPE 824064", "value_in_2": null}, "referencePublication": {"value_in_1": "https://doi.org/10.1051/0004-6361/202142000", "value_in_2": null}}, "equivalences": {"codeRepository": "https://github.com/cosimoNigro/agnpy", "runtimePlatform": null, "targetProduct": null, "applicationSubCategory": null, "fileSize": null, "installUrl": null, "memoryRequirements": null, "permissions": null, "processorRequirements": null, "softwareHelp": null, "storageRequirements": null, "supportingData": null, "citation": null, "copyrightHolder": null, "copyrightYear": null, "dateCreated": "2019-12-17", "editor": null, "encoding": null, "fileFormat": null, "producer": null, "provider": null, "publisher": null, "sponsor": null, "isAccessibleForFree": null, "hasPart": null, "position": null, "name": "agnpy", "sameAs": null, "relatedLink": null, "givenName": null, "familyName": null, "email": null, "affiliation": null, "address": null, "": null, "softwareSuggestions": null, "contIntegration": null, "embargoDate": null, "issueTracker": "https://github.com/cosimoNigro/agnpy/issues", "readme": "https://agnpy.readthedocs.io/en/latest/", "creator": null, "endDate": null, "roleName": null, "startDate": null}}}

Logs

Log File: docs/records/18505251/18505251_somef_log.txt

2026-03-05 09:08:30,163 somef_tool.py:140 INFO Running SOMEF on repository: https://github.com/cosimoNigro/agnpy
2026-03-05 09:08:39,338 somef_utils.py:43 INFO SOftware Metadata Extraction Framework (SOMEF) Command Line Interface
HEAD Content-Length: 8349452
CODEMETA PARSER - Processing file: /tmp/tmpq2627z07/cosimoNigro_agnpy/agnpy-master/codemeta.json
CODEMETA PARSER - Source: https://raw.githubusercontent.com/cosimoNigro/agnpy/master/codemeta.json
Homepage
Saving json data to docs/records/18505251/18505251_somef.json
Success

2026-03-05 09:08:39,338 somef_utils.py:45 ERROR 05-Mar-26 09:08:35-DEBUG-Starting new HTTPS connection (1): github.com:443
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05-Mar-26 09:08:36-INFO-Remaining GitHub API requests: 22 ### Next rate limit reset at: 2026-03-05 09:55:33
05-Mar-26 09:08:36-DEBUG-Starting new HTTPS connection (1): api.github.com:443
05-Mar-26 09:08:36-DEBUG-https://api.github.com:443 "GET /repos/cosimoNigro/agnpy/releases?per_page=100&page=1 HTTP/1.1" 200 None
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05-Mar-26 09:08:36-INFO-Repository information successfully loaded.

05-Mar-26 09:08:36-INFO-Downloading https://github.com/cosimoNigro/agnpy/archive/master.zip
05-Mar-26 09:08:36-DEBUG-Starting new HTTPS connection (1): github.com:443
05-Mar-26 09:08:36-DEBUG-https://github.com:443 "GET /cosimoNigro/agnpy/archive/master.zip HTTP/1.1" 302 0
05-Mar-26 09:08:36-DEBUG-Starting new HTTPS connection (1): codeload.github.com:443
05-Mar-26 09:08:36-DEBUG-https://codeload.github.com:443 "GET /cosimoNigro/agnpy/zip/refs/heads/master HTTP/1.1" 200 8349452
05-Mar-26 09:08:36-DEBUG-Starting new HTTPS connection (1): github.com:443
05-Mar-26 09:08:37-DEBUG-https://github.com:443 "GET /cosimoNigro/agnpy/archive/master.zip HTTP/1.1" 302 0
05-Mar-26 09:08:37-DEBUG-Starting new HTTPS connection (1): codeload.github.com:443
05-Mar-26 09:08:37-DEBUG-https://codeload.github.com:443 "GET /cosimoNigro/agnpy/zip/refs/heads/master HTTP/1.1" 200 None
05-Mar-26 09:08:37-INFO-############### Processing package file: pyproject.toml ############### 
05-Mar-26 09:08:37-INFO-############### Processing package file: requirements.txt ############### 
05-Mar-26 09:08:37-INFO-Extracting information using headers
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:112: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.

For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.


  df['Content'].replace('', np.nan, inplace=True)
05-Mar-26 09:08:37-INFO-Labeling headers.
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:224: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
A typical example is when you are setting values in a column of a DataFrame, like:

df["col"][row_indexer] = value

Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy

  data['Group'].iloc[0] = ['unknown']
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:230: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
A typical example is when you are setting values in a column of a DataFrame, like:

df["col"][row_indexer] = value

Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy

  data['Group'].iloc[0] = np.NaN
05-Mar-26 09:08:38-INFO-Header information extracted.
05-Mar-26 09:08:38-INFO-Splitting text into valid excerpts for classification
05-Mar-26 09:08:38-INFO-Extraction of bibtex citation from readme completed. 

05-Mar-26 09:08:38-INFO-Text Successfully split.
05-Mar-26 09:08:38-INFO-Classifying excerpts for the category description
05-Mar-26 09:08:38-INFO-Checking thresholds for classified excerpts.
05-Mar-26 09:08:38-INFO-All excerpts below the threshold have been removed.
05-Mar-26 09:08:38-DEBUG-Starting new HTTPS connection (1): github.com:443
05-Mar-26 09:08:38-DEBUG-https://github.com:443 "GET /cosimoNigro/agnpy/wiki HTTP/1.1" 302 0
05-Mar-26 09:08:38-INFO-Completed extracting regular expressions

Log File: docs/records/18505251/18505251_codemeta_completeness_tool_log.txt

2026-03-05 09:08:39,341 codemeta_completeness_tool.py:72 INFO [codemeta completeness tool] Running Codemeta Completeness Tool on record ID: 18505251

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