5526844 report - OSSR Reports

Repository Information

Repository Name: JColl88/sdc1-solution-binder: SDC1 Solution 1.0.0
Record ID: 5526844
Repository URL: https://gitlab.com/ska-telescope/sdc/sdc1-solution
Tool Type: SoftwareSourceCode
Version: 1.0.0

Results

Indicator	generated by	evidence	Value	Run Status	Check passed
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 27.0%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'author', 'dateCreated', 'dateModified', 'datePublished', 'keywords', 'license', 'version', 'description', 'name', 'name', 'contIntegration', 'funding', 'issueTracker'] keys in codemeta file.	0.2702702702702703	✅	✅
https://w3id.org/everse/i/indicators/codemeta_completeness	Codemeta Completeness Tool	Codemeta completeness = 27.0%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'author', 'dateCreated', 'dateModified', 'datePublished', 'keywords', 'license', 'version', 'description', 'name', 'name', 'contIntegration', 'funding', 'issueTracker'] keys in codemeta file.	0.2702702702702703	✅	❌
https://w3id.org/everse/i/indicators/doi_presence	SOMEF	Found DOI: https://doi.org/10.5281/zenodo.5526844 with confidence 100.0% from source https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/blob/master/README.md	https://doi.org/10.5281/zenodo.5526844	⚠️	✅
https://w3id.org/everse/i/indicators/codemeta_discrepancy	SOMEF, Codemeta Completeness Tool	Comparison value: 0.75, Threshold: 0.5, Status: True	0.75	⚠️	✅

Results Output

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.27
Evidence: Codemeta completeness = 27.0%, minimal threshold to consider this check to pass is set to 20.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'author', 'dateCreated', 'dateModified', 'datePublished', 'keywords', 'license', 'version', 'description', 'name', 'name', 'contIntegration', 'funding', 'issueTracker'] keys in codemeta file.
Output:

{"pass": true, "value": 0.2702702702702703, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/BSD-3-Clause", "codeRepository": "https://gitlab.com/ska-telescope/sdc/sdc1-solution", "contIntegration": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/pipelines", "dateCreated": "2021-09-24", "datePublished": "2021-09-24", "dateModified": "2021-09-24", "downloadUrl": "https://gitlab.com/ska-telescope/sdc/sdc1-solution", "issueTracker": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/issues", "name": "SKAO Science Data Challenge 1 Solution Workflow", "version": "1.0.0", "description": "The SKA Science Data Challenge 1 (SDC1, https://astronomers.skatelescope.org/ska-science-data-challenge-1/) tasked participants with identifying and classifying sources in synthetic radio images.\nHere we present an environment and workflow for producing a solution to this challenge that can easily be reproduced and developed further.", "applicationCategory": "Astronomy", "funding": "H2020 ESCAPE", "keywords": ["astronomy", "skao", "data", "source finding", "machine learning"], "programmingLanguage": ["Python 3"], "runtimePlatform": ["Docker"], "operatingSystem": ["Linux", "macOS"], "softwareRequirements": ["Python 3.6+"], "author": [{"@type": "Person", "givenName": "James", "familyName": "Collinson", "email": "james.collinson@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Alex", "familyName": "Clarke", "email": "alex.clarke@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Rob", "familyName": "Barnsley", "email": "rob.barnsley@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Rohini", "familyName": "Joshi", "email": "rohini.joshi@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}]}, "threshold": 0.2}

https://w3id.org/everse/i/indicators/codemeta_completeness

Status: CompletedActionStatus
Value: 0.27
Evidence: Codemeta completeness = 27.0%, minimal threshold to consider this check to pass is set to 50.0%. Found ['codeRepository', 'programmingLanguage', 'runtimePlatform', 'applicationCategory', 'downloadUrl', 'operatingSystem', 'softwareRequirements', 'author', 'dateCreated', 'dateModified', 'datePublished', 'keywords', 'license', 'version', 'description', 'name', 'name', 'contIntegration', 'funding', 'issueTracker'] keys in codemeta file.
Output:

{"pass": false, "value": 0.2702702702702703, "codemeta_dict": {"@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "license": "https://spdx.org/licenses/BSD-3-Clause", "codeRepository": "https://gitlab.com/ska-telescope/sdc/sdc1-solution", "contIntegration": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/pipelines", "dateCreated": "2021-09-24", "datePublished": "2021-09-24", "dateModified": "2021-09-24", "downloadUrl": "https://gitlab.com/ska-telescope/sdc/sdc1-solution", "issueTracker": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/issues", "name": "SKAO Science Data Challenge 1 Solution Workflow", "version": "1.0.0", "description": "The SKA Science Data Challenge 1 (SDC1, https://astronomers.skatelescope.org/ska-science-data-challenge-1/) tasked participants with identifying and classifying sources in synthetic radio images.\nHere we present an environment and workflow for producing a solution to this challenge that can easily be reproduced and developed further.", "applicationCategory": "Astronomy", "funding": "H2020 ESCAPE", "keywords": ["astronomy", "skao", "data", "source finding", "machine learning"], "programmingLanguage": ["Python 3"], "runtimePlatform": ["Docker"], "operatingSystem": ["Linux", "macOS"], "softwareRequirements": ["Python 3.6+"], "author": [{"@type": "Person", "givenName": "James", "familyName": "Collinson", "email": "james.collinson@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Alex", "familyName": "Clarke", "email": "alex.clarke@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Rob", "familyName": "Barnsley", "email": "rob.barnsley@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Rohini", "familyName": "Joshi", "email": "rohini.joshi@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}]}, "threshold": 0.5}

https://w3id.org/everse/i/indicators/codemeta_discrepancy

Status: PotentialActionStatus
Value: 0.75
Evidence: Comparison value: 0.75, Threshold: 0.5, Status: True
Output:

{"pass": true, "value": 0.75, "threshold": 0.5, "results": {"completeness_1": 0.2702702702702703, "codemeta_version_1": "codemeta-2.0", "codemeta_version_2": "codemeta-3.0", "completeness_2": 0.24324324324324326, "missing_keys_1": ["targetProduct", "applicationSubCategory", "fileSize", "installUrl", "memoryRequirements", "permissions", "processorRequirements", "releaseNotes", "softwareHelp", "softwareVersion", "storageRequirements", "supportingData", "citation", "contributor", "copyrightHolder", "copyrightYear", "editor", "encoding", "fileFormat", "funder", "producer", "provider", "publisher", "sponsor", "isAccessibleForFree", "isPartOf", "hasPart", "position", "identifier", "sameAs", "url", "relatedLink", "givenName", "familyName", "email", "affiliation", "identifier", "address", "", "", "softwareSuggestions", "maintainer", "buildInstructions", "developmentStatus", "embargoDate", "referencePublication", "readme", "creator", "", "", "", "endDate", "roleName", "startDate"], "missing_keys_2": ["runtimePlatform", "targetProduct", "applicationCategory", "applicationSubCategory", "fileSize", "installUrl", "memoryRequirements", "operatingSystem", "permissions", "processorRequirements", "releaseNotes", "softwareHelp", "softwareVersion", "storageRequirements", "supportingData", "citation", "contributor", "copyrightHolder", "copyrightYear", "datePublished", "editor", "encoding", "fileFormat", "funder", "producer", "provider", "publisher", "sponsor", "version", "isAccessibleForFree", "isPartOf", "hasPart", "position", "sameAs", "url", "relatedLink", "givenName", "familyName", "email", "affiliation", "address", "", "", "softwareSuggestions", "maintainer", "developmentStatus", "embargoEndDate", "funding", "referencePublication", "creator", "review", "reviewAspect", "reviewBody", "endDate", "roleName", "startDate"], "existing_keys_1": ["codeRepository", "programmingLanguage", "runtimePlatform", "applicationCategory", "downloadUrl", "operatingSystem", "softwareRequirements", "author", "dateCreated", "dateModified", "datePublished", "keywords", "license", "version", "description", "name", "name", "contIntegration", "funding", "issueTracker"], "existing_keys_2": ["codeRepository", "programmingLanguage", "downloadUrl", "softwareRequirements", "author", "dateCreated", "dateModified", "keywords", "license", "description", "identifier", "name", "identifier", "name", "continuousIntegration", "buildInstructions", "issueTracker", "readme"], "differences": {"codeRepository": {"value_in_1": "https://gitlab.com/ska-telescope/sdc/sdc1-solution", "value_in_2": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/"}, "runtimePlatform": {"value_in_1": ["Docker"], "value_in_2": null}, "applicationCategory": {"value_in_1": "Astronomy", "value_in_2": null}, "downloadUrl": {"value_in_1": "https://gitlab.com/ska-telescope/sdc/sdc1-solution", "value_in_2": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/branches"}, "operatingSystem": {"value_in_1": ["Linux", "macOS"], "value_in_2": null}, "softwareRequirements": {"value_in_1": ["Python 3.6+"], "value_in_2": [{"name": "aplpy"}, {"name": "astropy"}, {"name": "bdsf"}, {"name": "black"}, {"name": "cython"}, {"name": "flake8"}, {"name": "matplotlib"}, {"name": "memory_profiler"}, {"name": "MontagePy"}, {"name": "numpy"}, {"name": "scipy"}, {"name": "scikit-learn"}, {"name": "setuptools"}, {"name": "ska-sdc"}, {"name": "sphinx"}, {"name": "sphinx_rtd_theme"}, {"name": "wcsaxes"}, {"name": "wheel"}, "Python 3.6+"]}, "author": {"value_in_1": [{"@type": "Person", "givenName": "James", "familyName": "Collinson", "email": "james.collinson@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Alex", "familyName": "Clarke", "email": "alex.clarke@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Rob", "familyName": "Barnsley", "email": "rob.barnsley@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}, {"@type": "Person", "givenName": "Rohini", "familyName": "Joshi", "email": "rohini.joshi@skao.int", "affiliation": {"@type": "Organization", "name": "SKA Observatory"}}], "value_in_2": [{"@type": "Person", "email": "james.collinson@skao.int", "name": null}, {"@type": "Person", "email": "alex.clarke@skao.int", "name": null}, {"@type": "Person", "email": "rob.barnsley@skao.int", "name": null}, {"@type": "Person", "email": "rohini.joshi@skao.int", "name": null}]}, "datePublished": {"value_in_1": "2021-09-24", "value_in_2": null}, "license": {"value_in_1": "https://spdx.org/licenses/BSD-3-Clause", "value_in_2": {"name": "BSD 2-Clause", "url": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/raw/master/LICENSE", "identifier": "https://spdx.org/licenses/BSD-2-Clause", "spdx_id": "https://spdx.org/licenses/BSD-3-Clause"}}, "version": {"value_in_1": "1.0.0", "value_in_2": null}, "description": {"value_in_1": "The SKA Science Data Challenge 1 (SDC1, https://astronomers.skatelescope.org/ska-science-data-challenge-1/) tasked participants with identifying and classifying sources in synthetic radio images.\nHere we present an environment and workflow for producing a solution to this challenge that can easily be reproduced and developed further.", "value_in_2": ["The SKA Science Data Challenge 1 (SDC1, https://astronomers.skatelescope.org/ska-science-data-challenge-1/) tasked participants with identifying and classifying sources in synthetic radio images.\nHere we present an environment and workflow for producing a solution to this challenge that can easily be reproduced and developed further."]}, "identifier": {"value_in_1": null, "value_in_2": ["https://doi.org/10.5281/zenodo.5526844"]}, "contIntegration": {"value_in_1": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/pipelines", "value_in_2": null}, "buildInstructions": {"value_in_1": null, "value_in_2": ["https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/blob/master/README.md"]}, "funding": {"value_in_1": "H2020 ESCAPE", "value_in_2": null}, "issueTracker": {"value_in_1": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/issues", "value_in_2": "https://gitlab.com/ska-telescope/sdc/sdc1-solution//issues"}, "readme": {"value_in_1": null, "value_in_2": "https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/blob/master/README.md"}}, "equivalences": {"programmingLanguage": ["Python 3"], "targetProduct": null, "applicationSubCategory": null, "fileSize": null, "installUrl": null, "memoryRequirements": null, "permissions": null, "processorRequirements": null, "releaseNotes": null, "softwareHelp": null, "softwareVersion": null, "storageRequirements": null, "supportingData": null, "citation": null, "contributor": null, "copyrightHolder": null, "copyrightYear": null, "dateCreated": "2021-09-24", "dateModified": "2021-09-24", "editor": null, "encoding": null, "fileFormat": null, "funder": null, "keywords": ["astronomy", "skao", "data", "source finding", "machine learning"], "producer": null, "provider": null, "publisher": null, "sponsor": null, "isAccessibleForFree": null, "isPartOf": null, "hasPart": null, "position": null, "name": "SKAO Science Data Challenge 1 Solution Workflow", "sameAs": null, "url": null, "relatedLink": null, "givenName": null, "familyName": null, "email": null, "affiliation": null, "address": null, "": null, "softwareSuggestions": null, "maintainer": null, "developmentStatus": null, "embargoDate": null, "referencePublication": null, "creator": null, "endDate": null, "roleName": null, "startDate": null}}}

Logs

Log File: docs/records/5526844/5526844_somef_log.txt

2026-03-05 10:05:07,987 somef_tool.py:140 INFO Running SOMEF on repository: https://gitlab.com/ska-telescope/sdc/sdc1-solution
2026-03-05 10:05:20,210 somef_utils.py:43 INFO SOftware Metadata Extraction Framework (SOMEF) Command Line Interface
CODEMETA PARSER - Processing file: /tmp/tmphi9r94j8/repo/sdc1-solution-master-ae8fc3e09f2fe613b6768d847c4b4d42e9cdf9b5/codemeta.json
CODEMETA PARSER - Source: https:///ska-telescope/sdc/sdc1-solution/-/blob/master/codemeta.json
Saving json data to docs/records/5526844/5526844_somef.json
Success

2026-03-05 10:05:20,211 somef_utils.py:45 ERROR 05-Mar-26 10:05:13-DEBUG-Starting new HTTPS connection (1): gitlab.com:443
05-Mar-26 10:05:14-DEBUG-https://gitlab.com:443 "GET /api/v4/projects HTTP/1.1" 200 None
05-Mar-26 10:05:14-INFO-gitlab.com is GitLab.
05-Mar-26 10:05:14-INFO-Loading Repository https://gitlab.com/ska-telescope/sdc/sdc1-solution Information....
05-Mar-26 10:05:14-INFO-Downloading https://gitlab.com/ska-telescope/sdc/sdc1-solution
05-Mar-26 10:05:14-DEBUG-Starting new HTTPS connection (1): gitlab.com:443
05-Mar-26 10:05:14-DEBUG-https://gitlab.com:443 "GET /ska-telescope/sdc/sdc1-solution HTTP/1.1" 200 None
05-Mar-26 10:05:14-INFO-Downloading https://gitlab.com/api/v4/projects/19657157
05-Mar-26 10:05:14-DEBUG-Starting new HTTPS connection (1): gitlab.com:443
05-Mar-26 10:05:14-DEBUG-https://gitlab.com:443 "GET /api/v4/projects/19657157 HTTP/1.1" 200 None
05-Mar-26 10:05:14-INFO-Getting releases from: https://gitlab.com/api/v4/projects/19657157/releases?page=1&per_page=100
05-Mar-26 10:05:14-DEBUG-Starting new HTTPS connection (1): gitlab.com:443
05-Mar-26 10:05:15-DEBUG-https://gitlab.com:443 "GET /api/v4/projects/19657157/releases?page=1&per_page=100 HTTP/1.1" 200 2
05-Mar-26 10:05:15-INFO-Response: 200
05-Mar-26 10:05:15-WARNING-Not releseases found.
05-Mar-26 10:05:15-DEBUG-Starting new HTTPS connection (1): gitlab.com:443
05-Mar-26 10:05:15-DEBUG-https://gitlab.com:443 "GET /ska-telescope/sdc/sdc1-solution/-/raw/master/LICENSE HTTP/1.1" 200 1460
05-Mar-26 10:05:15-INFO-Repository information successfully loaded. 

05-Mar-26 10:05:15-INFO-Downloading https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/archive/master/sdc1-solution.zip
05-Mar-26 10:05:15-DEBUG-Starting new HTTPS connection (1): gitlab.com:443
05-Mar-26 10:05:15-DEBUG-https://gitlab.com:443 "GET /ska-telescope/sdc/sdc1-solution/-/archive/master/sdc1-solution.zip HTTP/1.1" 200 None
05-Mar-26 10:05:15-INFO-############### Processing package file: requirements.txt ############### 
05-Mar-26 10:05:15-INFO-############### Processing package file: requirements.txt ############### 
05-Mar-26 10:05:15-INFO-Extracting information using headers
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:112: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.

For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.


  df['Content'].replace('', np.nan, inplace=True)
05-Mar-26 10:05:15-INFO-Labeling headers.
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:224: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
A typical example is when you are setting values in a column of a DataFrame, like:

df["col"][row_indexer] = value

Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy

  data['Group'].iloc[0] = ['unknown']
/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.11/site-packages/somef/header_analysis.py:230: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
A typical example is when you are setting values in a column of a DataFrame, like:

df["col"][row_indexer] = value

Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy

  data['Group'].iloc[0] = np.NaN
05-Mar-26 10:05:19-INFO-Header information extracted.
05-Mar-26 10:05:19-INFO-Splitting text into valid excerpts for classification
05-Mar-26 10:05:19-INFO-Extraction of bibtex citation from readme completed. 

05-Mar-26 10:05:19-INFO-Text Successfully split.
05-Mar-26 10:05:19-INFO-Classifying excerpts for the category description
05-Mar-26 10:05:19-INFO-Checking thresholds for classified excerpts.
05-Mar-26 10:05:19-INFO-All excerpts below the threshold have been removed.
05-Mar-26 10:05:19-DEBUG-Starting new HTTPS connection (1): gitlab.com:443
05-Mar-26 10:05:19-DEBUG-https://gitlab.com:443 "GET /ska-telescope/sdc/sdc1-solution/wiki HTTP/1.1" 302 98
05-Mar-26 10:05:19-INFO-Completed extracting regular expressions

Log File: docs/records/5526844/5526844_codemeta_completeness_tool_log.txt

2026-03-05 10:05:20,212 codemeta_completeness_tool.py:72 INFO [codemeta completeness tool] Running Codemeta Completeness Tool on record ID: 5526844

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