Comparison Report

Comparison between `codemeta_5526844.json` and `somef_codemeta_5526844.json`:

Summary

Comparison for Zenodo record 5526844, SKAO Science Data Challenge 1 Solution Workflow, hosted on RepoType.GITLAB:

contains 0 differences
contains 0 same values
missing 2 keys in docs/records/5526844/codemeta_5526844.json:
softwareVersion
- readme
missing 10 keys in docs/records/5526844/somef_codemeta_5526844.json:
- name
- codeRepository
- license
- version
- softwareVersion
- datePublished
- programmingLanguage
- issueTracker
- readme
- dateCreated

Full Report

Same Values

No items have the same values.

Differences

No differences found.

Missing Keys in First File:

softwareVersion
readme

Missing Keys in Second File:

name
codeRepository
license
version
softwareVersion
datePublished
programmingLanguage
issueTracker
readme
dateCreated

Completeness Report

5526844

Data

indicator: {'id': 'F1', 'name': 'CodemetaCompleteness', 'identifier': ''}
artifacts: {'url': '', 'softwareVersion': '', 'report': 'Completeness of the CodeMeta file based on the CodeMeta codemeta-3.0 specification.\n\nThe following keys are missing: targetProduct, applicationSubCategory, fileSize, installUrl, memoryRequirements, permissions, processorRequirements, releaseNotes, softwareHelp, softwareVersion, storageRequirements, supportingData, citation, contributor, copyrightHolder, copyrightYear, editor, encoding, fileFormat, funder, producer, provider, publisher, sponsor, isAccessibleForFree, isPartOf, hasPart, position, identifier, sameAs, url, relatedLink, givenName, familyName, email, affiliation, identifier, address, , , softwareSuggestions, maintainer, continuousIntegration, buildInstructions, developmentStatus, embargoEndDate, referencePublication, readme, creator, review, reviewAspect, reviewBody, endDate, roleName, startDate', 'codemeta': {'@context': 'https://doi.org/10.5063/schema/codemeta-2.0', '@type': 'SoftwareSourceCode', 'license': 'https://spdx.org/licenses/BSD-3-Clause', 'codeRepository': 'https://gitlab.com/ska-telescope/sdc/sdc1-solution', 'contIntegration': 'https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/pipelines', 'dateCreated': '2021-09-24', 'datePublished': '2021-09-24', 'dateModified': '2021-09-24', 'downloadUrl': 'https://gitlab.com/ska-telescope/sdc/sdc1-solution', 'issueTracker': 'https://gitlab.com/ska-telescope/sdc/sdc1-solution/-/issues', 'name': 'SKAO Science Data Challenge 1 Solution Workflow', 'version': '1.0.0', 'description': 'The SKA Science Data Challenge 1 (SDC1, https://astronomers.skatelescope.org/ska-science-data-challenge-1/) tasked participants with identifying and classifying sources in synthetic radio images.\nHere we present an environment and workflow for producing a solution to this challenge that can easily be reproduced and developed further.', 'applicationCategory': 'Astronomy', 'funding': 'H2020 ESCAPE', 'keywords': ['astronomy', 'skao', 'data', 'source finding', 'machine learning'], 'programmingLanguage': ['Python 3'], 'runtimePlatform': ['Docker'], 'operatingSystem': ['Linux', 'macOS'], 'softwareRequirements': ['Python 3.6+'], 'author': [{'@type': 'Person', 'givenName': 'James', 'familyName': 'Collinson', 'email': 'james.collinson@skao.int', 'affiliation': {'@type': 'Organization', 'name': 'SKA Observatory'}}, {'@type': 'Person', 'givenName': 'Alex', 'familyName': 'Clarke', 'email': 'alex.clarke@skao.int', 'affiliation': {'@type': 'Organization', 'name': 'SKA Observatory'}}, {'@type': 'Person', 'givenName': 'Rob', 'familyName': 'Barnsley', 'email': 'rob.barnsley@skao.int', 'affiliation': {'@type': 'Organization', 'name': 'SKA Observatory'}}, {'@type': 'Person', 'givenName': 'Rohini', 'familyName': 'Joshi', 'email': 'rohini.joshi@skao.int', 'affiliation': {'@type': 'Organization', 'name': 'SKA Observatory'}}]}}
result: {'type': 'float', 'value': 25.675675675675674}

Logs

Processing record: Record #5526844 : JColl88/sdc1-solution-binder: SDC1 Solution 1.0.0
Reloading codemeta from Zenodo
Getting all versions of the record from Zenodo
Versions: {5526844: '1.0.0'}
retrieved codemeta for version 5526844, created: 2021-09-24 15:43:08.670352+00:00, modified: 2021-09-29 13:14:58.845901+00:00
Compute completeness for all versions
Completeness for 5526844 = 25.68%
Repo: https://gitlab.com/ska-telescope/sdc/sdc1-solution
Reloading SOMEF codemeta from repository
SOftware Metadata Extraction Framework (SOMEF) Command Line Interface

Traceback (most recent call last):
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 84, in __load
    root = nltk.data.find(f"{self.subdir}/{zip_name}")
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/data.py", line 579, in find
    raise LookupError(resource_not_found)
LookupError: 
**********************************************************************
  Resource [93mwordnet[0m not found.
  Please use the NLTK Downloader to obtain the resource:

  [31m>>> import nltk
  >>> nltk.download('wordnet')
  [0m
  For more information see: https://www.nltk.org/data.html

  Attempted to load [93mcorpora/wordnet.zip/wordnet/[0m

  Searched in:
    - '/root/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/share/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/lib/nltk_data'
    - '/usr/share/nltk_data'
    - '/usr/local/share/nltk_data'
    - '/usr/lib/nltk_data'
    - '/usr/local/lib/nltk_data'
**********************************************************************


During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/builds/escape-ossr/rs_quality_checks/.venv/bin/somef", line 10, in <module>
    sys.exit(cli())
             ^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1161, in __call__
    return self.main(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1082, in main
    rv = self.invoke(ctx)
         ^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1697, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 1443, in invoke
    return ctx.invoke(self.callback, **ctx.params)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/click/core.py", line 788, in invoke
    return __callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/somef/__main__.py", line 162, in describe
    from . import somef_cli
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/somef/somef_cli.py", line 11, in <module>
    from . import header_analysis, regular_expressions, process_repository, configuration, process_files, \
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/somef/header_analysis.py", line 19, in <module>
    citation = [Word("citation").synsets[3], Word("reference").synsets[1], Word("cite").synsets[3]]
                ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/textblob/decorators.py", line 24, in __get__
    value = obj.__dict__[self.func.__name__] = self.func(obj)
                                               ^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/textblob/blob.py", line 190, in synsets
    return self.get_synsets(pos=None)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/textblob/blob.py", line 211, in get_synsets
    return _wordnet.synsets(self.string, pos)
           ^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 120, in __getattr__
    self.__load()
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 86, in __load
    raise e
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/corpus/util.py", line 81, in __load
    root = nltk.data.find(f"{self.subdir}/{self.__name}")
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builds/escape-ossr/rs_quality_checks/.venv/lib/python3.12/site-packages/nltk/data.py", line 579, in find
    raise LookupError(resource_not_found)
LookupError: 
**********************************************************************
  Resource [93mwordnet[0m not found.
  Please use the NLTK Downloader to obtain the resource:

  [31m>>> import nltk
  >>> nltk.download('wordnet')
  [0m
  For more information see: https://www.nltk.org/data.html

  Attempted to load [93mcorpora/wordnet[0m

  Searched in:
    - '/root/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/share/nltk_data'
    - '/builds/escape-ossr/rs_quality_checks/.venv/lib/nltk_data'
    - '/usr/share/nltk_data'
    - '/usr/local/share/nltk_data'
    - '/usr/lib/nltk_data'
    - '/usr/local/lib/nltk_data'
**********************************************************************


Creating empty docs/records/5526844/somef_codemeta_5526844.json

Keys	Action
`?`	Open this help
`n`	Next page
`p`	Previous page
`s`	Search

Comparison Report

Comparison between codemeta_5526844.json and somef_codemeta_5526844.json:

Summary

Full Report

Same Values

Differences

Missing Keys in First File:

Missing Keys in Second File:

Completeness Report

5526844

Meta

Data

Logs

Comparison between `codemeta_5526844.json` and `somef_codemeta_5526844.json`: